Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   EXW46_RS08645 Genome accession   NZ_CP036085
Coordinates   1716398..1717747 (+) Length   449 a.a.
NCBI ID   WP_215576676.1    Uniprot ID   -
Organism   Bacillus mycoides strain JAS12/5     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1711398..1722747
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW46_RS08625 (EXW46_08765) - 1712344..1712979 (-) 636 WP_131246517.1 YigZ family protein -
  EXW46_RS08630 (EXW46_08770) - 1713371..1714213 (+) 843 WP_002016143.1 DegV family protein -
  EXW46_RS08635 (EXW46_08775) - 1714376..1714690 (+) 315 WP_002089608.1 helix-turn-helix domain-containing protein -
  EXW46_RS08640 (EXW46_08780) - 1714955..1716271 (+) 1317 WP_215576677.1 NlpC/P60 family protein -
  EXW46_RS08645 (EXW46_08785) comFA 1716398..1717747 (+) 1350 WP_215576676.1 ATP-dependent helicase ComFA Machinery gene
  EXW46_RS08650 (EXW46_08790) - 1717747..1718451 (+) 705 WP_215576675.1 ComF family protein -
  EXW46_RS08655 (EXW46_08795) cspC 1718578..1718775 (+) 198 WP_001990088.1 cold shock protein CspC -
  EXW46_RS08660 (EXW46_08800) hpf 1719097..1719639 (+) 543 WP_002016135.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  EXW46_RS08665 (EXW46_08805) - 1720018..1720602 (+) 585 WP_002068272.1 hypothetical protein -
  EXW46_RS08670 (EXW46_08810) - 1720634..1721422 (+) 789 WP_215576674.1 hypothetical protein -
  EXW46_RS08675 (EXW46_08815) - 1721409..1722104 (+) 696 WP_060749253.1 hypothetical protein -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 50807.16 Da        Isoelectric Point: 9.5255

>NTDB_id=346583 EXW46_RS08645 WP_215576676.1 1716398..1717747(+) (comFA) [Bacillus mycoides strain JAS12/5]
MLAGKQLLLEELSSDLQDKLDHLKKNREVVCVQGVIKKSSKYMCQRCGNIEQRLFASFLCKRCNKVCTYCRKCITMGRVS
ECVVLVRGIAEISGENYLNPLQWEGVLSAGQELAAQSVVDAVKQKESFFIWAVCGAGKTEMLFRGIAEALQKGERVCIAT
PRTDVVLELAPRLQEVFPNINVAALYGGSLDREKDAALIVATTHQLLRYYRAFHVMIVDEIDAFPYHADKMLHYAVNEAT
KEEAARIYLTATPDEKWKRKLRNGKQKGVIISGRYHRHPLPVPAFRWCGNWKKGLIRKKIPRALLQWLNLYLSKRYPIFL
FVPHVRYVEEISQLLKSLNNQIDGVHAEDPARKEKVAAFRKGEIPLLVTTTILERGVTVKNLQVAVLGAEEEIFSESALV
QIAGRAGRSSDEPHGDVIYFHYGKTEAMVRAKKHIQSMNKNAKEQGLID

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=346583 EXW46_RS08645 WP_215576676.1 1716398..1717747(+) (comFA) [Bacillus mycoides strain JAS12/5]
ATGTTAGCCGGGAAACAGTTACTATTAGAAGAACTTTCTTCAGACTTGCAGGATAAATTGGATCATTTGAAAAAGAATCG
AGAAGTCGTTTGTGTACAAGGGGTAATTAAGAAATCTTCAAAATATATGTGCCAGCGTTGCGGAAATATAGAGCAGCGAC
TGTTTGCATCATTTCTATGTAAAAGGTGCAATAAAGTATGTACGTATTGCCGGAAATGTATAACGATGGGCAGGGTAAGT
GAATGTGTTGTACTTGTTCGCGGGATTGCTGAAATAAGCGGAGAAAATTATTTAAATCCGTTACAGTGGGAAGGCGTTTT
GTCTGCTGGTCAGGAGTTAGCTGCGCAAAGTGTCGTTGACGCTGTTAAGCAGAAAGAATCATTTTTTATTTGGGCGGTGT
GCGGGGCTGGAAAAACAGAAATGTTGTTTCGCGGAATTGCAGAGGCACTACAAAAGGGAGAGAGAGTTTGTATTGCAACG
CCGAGAACGGACGTTGTACTTGAATTAGCACCAAGATTACAAGAAGTGTTTCCAAATATAAATGTAGCTGCTTTATACGG
AGGGAGTTTAGACCGAGAAAAAGATGCGGCGTTAATCGTTGCAACTACACATCAATTGTTACGTTATTATAGGGCGTTCC
ATGTCATGATTGTAGATGAGATAGATGCTTTTCCATATCATGCGGATAAGATGTTACATTATGCAGTAAACGAAGCGACG
AAAGAGGAGGCAGCACGTATTTATTTAACTGCAACTCCAGATGAAAAGTGGAAGCGTAAATTGCGGAATGGTAAGCAAAA
AGGGGTTATTATTTCAGGACGTTATCATCGTCATCCGTTGCCAGTTCCAGCATTTCGATGGTGCGGAAATTGGAAAAAGG
GTCTTATACGTAAAAAAATTCCTCGTGCTTTATTACAATGGTTAAATCTGTACTTATCGAAACGATACCCCATTTTTCTA
TTTGTTCCTCATGTGCGATATGTAGAAGAAATTAGCCAGTTATTAAAATCATTAAACAATCAAATTGACGGTGTGCATGC
AGAAGATCCGGCGAGAAAAGAGAAGGTAGCAGCTTTCAGAAAAGGAGAAATCCCTTTATTAGTTACAACGACGATTTTGG
AACGAGGAGTAACTGTTAAAAATTTACAAGTTGCAGTTTTAGGAGCTGAGGAAGAGATATTTTCAGAAAGTGCTCTCGTT
CAAATTGCAGGGCGTGCTGGCAGAAGCTCTGATGAACCGCATGGAGATGTTATCTATTTTCATTATGGAAAGACAGAGGC
GATGGTGCGTGCGAAAAAACATATTCAAAGTATGAATAAGAATGCTAAAGAACAAGGATTGATAGATTGA

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(107-254)

Helicase conserved C-terminal domain (Helicase_C)

(313-409)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

50.905

98.441

0.501
  comFA Latilactobacillus sakei subsp. sakei 23K

41.206

88.641

0.365

Multiple sequence alignment