Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   EXW46_RS00560 Genome accession   NZ_CP036085
Coordinates   102868..103191 (+) Length   107 a.a.
NCBI ID   WP_002011473.1    Uniprot ID   A0A366GDN4
Organism   Bacillus mycoides strain JAS12/5     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 97868..108191
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW46_RS00545 (EXW46_00535) - 98386..99753 (-) 1368 WP_131246145.1 aldehyde dehydrogenase -
  EXW46_RS00550 (EXW46_00540) inhA1 99924..102311 (-) 2388 WP_002188852.1 M6 family metalloprotease immune inhibitor InhA1 -
  EXW46_RS00555 (EXW46_00545) - 102654..102788 (+) 135 WP_002011474.1 anti-repressor SinI family protein -
  EXW46_RS00560 (EXW46_00550) sinR 102868..103191 (+) 324 WP_002011473.1 helix-turn-helix domain-containing protein Regulator
  EXW46_RS00565 (EXW46_00555) calY 103273..103866 (-) 594 WP_131246144.1 biofilm matrix protein CalY -
  EXW46_RS00570 (EXW46_00560) - 104310..105143 (-) 834 WP_002168858.1 DUF4047 domain-containing protein -
  EXW46_RS00575 (EXW46_00565) - 105305..105892 (-) 588 WP_044437854.1 CalY family protein -
  EXW46_RS00580 (EXW46_00570) sipW 105961..106530 (-) 570 WP_002064334.1 signal peptidase I SipW -
  EXW46_RS00585 (EXW46_00575) - 106727..108013 (-) 1287 WP_002126097.1 D-alanyl-D-alanine carboxypeptidase family protein -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12304.07 Da        Isoelectric Point: 7.2050

>NTDB_id=346559 EXW46_RS00560 WP_002011473.1 102868..103191(+) (sinR) [Bacillus mycoides strain JAS12/5]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTTESHLDSEWTQLV
KDAMSSGVSKEQFREFLEFTQWKKNQQ

Nucleotide


Download         Length: 324 bp        

>NTDB_id=346559 EXW46_RS00560 WP_002011473.1 102868..103191(+) (sinR) [Bacillus mycoides strain JAS12/5]
ATGATAGGAGAACGTATAAAACGCCTTCGTTTACAAAAAGGTATTTCATTAACAGAACTCGCCGAAAAAGCTGGTGTCGC
TAAATCTTACATTAGTTCTATAGAACGGAACTTACAAAAAAACCCTTCTATTCAGTTTCTTGAAAAAATTGCAGCTGTTC
TACAAATTCCAGTTGATACTTTACTTCACGATGAAACAACAACGGAAAGTCATCTAGACTCCGAATGGACACAGCTCGTT
AAAGATGCGATGAGCTCTGGTGTCTCAAAAGAACAGTTTCGTGAATTTCTCGAATTTACACAATGGAAGAAAAATCAACA
ATAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-60)

Anti-repressor SinI (SinI)

(72-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A366GDN4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

66.972

100

0.682

Multiple sequence alignment