Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   GII88_RS16860 Genome accession   NZ_CP045814
Coordinates   3224670..3225143 (-) Length   157 a.a.
NCBI ID   WP_003184615.1    Uniprot ID   Q65FU5
Organism   Bacillus licheniformis strain P8_B2     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3219670..3230143
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GII88_RS16820 (GII88_16820) - 3220183..3220971 (+) 789 WP_003184598.1 ABC transporter ATP-binding protein -
  GII88_RS16825 (GII88_16825) - 3220934..3221758 (+) 825 WP_061566005.1 ABC transporter permease -
  GII88_RS16830 (GII88_16830) ytkD 3221789..3222265 (-) 477 WP_003184602.1 RNA deprotection pyrophosphohydrolase -
  GII88_RS16835 (GII88_16835) - 3222460..3222783 (-) 324 WP_003184604.1 hypothetical protein -
  GII88_RS16840 (GII88_16840) - 3222831..3223235 (-) 405 WP_003184607.1 phage holin family protein -
  GII88_RS16845 (GII88_16845) - 3223387..3223824 (-) 438 WP_003184609.1 Dps family protein -
  GII88_RS16850 (GII88_16850) ytzI 3223958..3224101 (+) 144 WP_003184611.1 YtzI protein -
  GII88_RS16855 (GII88_16855) - 3224095..3224538 (-) 444 WP_003184613.1 FixH family protein -
  GII88_RS16860 (GII88_16860) luxS 3224670..3225143 (-) 474 WP_003184615.1 S-ribosylhomocysteine lyase Regulator
  GII88_RS16865 (GII88_16865) yidD 3225281..3225508 (+) 228 WP_003184617.1 membrane protein insertion efficiency factor YidD -
  GII88_RS16870 (GII88_16870) - 3225505..3226074 (-) 570 WP_003184618.1 carbonic anhydrase -
  GII88_RS16875 (GII88_16875) - 3226201..3227382 (+) 1182 WP_003184620.1 GTP-binding protein -
  GII88_RS16880 (GII88_16880) - 3227481..3228476 (+) 996 WP_061566004.1 zinc ABC transporter substrate-binding protein -
  GII88_RS16885 (GII88_16885) - 3228562..3228807 (-) 246 WP_003184624.1 type B 50S ribosomal protein L31 -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17885.47 Da        Isoelectric Point: 5.5531

>NTDB_id=346550 GII88_RS16860 WP_003184615.1 3224670..3225143(-) (luxS) [Bacillus licheniformis strain P8_B2]
MPSVESFELDHNAVKAPYVRHCGVHKVGTDGVVNKFDIRFCQPNKQAMKPDTIHTLEHLLAFTIRTYAEKYDHFDIIDIS
PMGCQTGYYLVVSGEPKVEEIVDLLEDTFKEAVEVTEIPAANEKQCGQAKLHDLEGAKRMMRFWLSQNKEDLLKVFG

Nucleotide


Download         Length: 474 bp        

>NTDB_id=346550 GII88_RS16860 WP_003184615.1 3224670..3225143(-) (luxS) [Bacillus licheniformis strain P8_B2]
ATGCCTTCAGTTGAAAGTTTTGAGCTTGACCATAATGCGGTAAAAGCGCCTTATGTCAGACACTGCGGCGTCCACAAAGT
GGGAACGGACGGCGTCGTCAACAAGTTTGACATCCGTTTTTGCCAGCCGAATAAACAGGCAATGAAACCTGATACGATTC
ATACTTTGGAGCACCTTCTTGCATTTACAATCCGCACATATGCGGAAAAATATGACCACTTTGATATTATCGACATTTCG
CCGATGGGCTGCCAAACGGGCTATTACCTGGTGGTAAGCGGTGAGCCGAAAGTGGAAGAAATCGTTGATTTGCTTGAGGA
TACGTTCAAAGAAGCCGTTGAAGTGACTGAAATTCCTGCGGCTAACGAAAAACAGTGCGGCCAGGCAAAGCTTCACGATC
TTGAAGGCGCAAAGCGCATGATGCGTTTTTGGCTTTCGCAAAATAAAGAAGACCTGCTCAAGGTGTTTGGGTAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-150)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q65FU5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

35.802

100

0.369