Detailed information    

insolico Bioinformatically predicted

Overview

Name   recS   Type   Machinery gene
Locus tag   GII88_RS12990 Genome accession   NZ_CP045814
Coordinates   2487307..2488803 (-) Length   498 a.a.
NCBI ID   WP_003183060.1    Uniprot ID   Q65HZ5
Organism   Bacillus licheniformis strain P8_B2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2482307..2493803
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GII88_RS12960 (GII88_12960) - 2482365..2483639 (-) 1275 WP_003183047.1 Glu/Leu/Phe/Val dehydrogenase -
  GII88_RS12965 (GII88_12965) - 2483835..2484419 (-) 585 WP_003183050.1 genetic competence negative regulator -
  GII88_RS12970 (GII88_12970) - 2484573..2485358 (-) 786 WP_009327990.1 metallophosphoesterase -
  GII88_RS12975 (GII88_12975) - 2485437..2485880 (-) 444 WP_011198077.1 YpbF family protein -
  GII88_RS12980 (GII88_12980) - 2485948..2486727 (-) 780 WP_011198078.1 LysM peptidoglycan-binding domain-containing protein -
  GII88_RS12985 (GII88_12985) - 2486669..2487313 (-) 645 WP_003183057.1 CPBP family intramembrane glutamic endopeptidase -
  GII88_RS12990 (GII88_12990) recS 2487307..2488803 (-) 1497 WP_003183060.1 ATP-dependent DNA helicase RecQ Machinery gene
  GII88_RS12995 (GII88_12995) - 2488796..2489854 (-) 1059 WP_003183062.1 helix-turn-helix domain-containing protein -
  GII88_RS13000 (GII88_13000) - 2490118..2490366 (+) 249 WP_003183064.1 ferredoxin -
  GII88_RS13005 (GII88_13005) - 2490520..2491098 (-) 579 WP_003183066.1 ECF transporter S component -
  GII88_RS13010 (GII88_13010) serA 2491641..2493218 (+) 1578 WP_017473935.1 phosphoglycerate dehydrogenase -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 55884.36 Da        Isoelectric Point: 7.6259

>NTDB_id=346516 GII88_RS12990 WP_003183060.1 2487307..2488803(-) (recS) [Bacillus licheniformis strain P8_B2]
MDKLHQALRRYFGYHAFKKGQETIIKSVLEGRDTVAMLPTGGGKSLCYQLPGLLLDGTVLIVSPLLSLMEDQVQQLKMRG
EKRAAALNSALTHQEKNDVLNRLHRLKYLYISPEALQSGQMLKKLQLLNVSLFVVDEAHCISQWGHDFRPDYSKLGDIKA
LLGHPVTLALTATATEATLKDISEILGLKAANYLIHSVDRPNIALHIEKLRDTAEKTERLTGLVQKLQGPGLVYCPTRKW
AEELADKLRKEANLRTGFYHGGMEASDRMLIQQQFIRNQLDVVCCTNAFGMGVDKPDIRYVIHFSLPQTIEAYLQEIGRA
GRDGKRSVSILLKAPGDEEIQEQLIQMEALSQSDIGFLYEKLAGVKDERCRREALQLAGLSETQARHFLHLYEKVHHLGG
DGRAVIQREMDSRRQLKLKKAAGFAAVTETEGCFRESLLAYFNEQKKPPKTDETACCTSCGLSLEAYEVKGDRPSMNKLT
AWEEELDTIFAASCDRVC

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=346516 GII88_RS12990 WP_003183060.1 2487307..2488803(-) (recS) [Bacillus licheniformis strain P8_B2]
ATGGATAAACTTCATCAGGCGCTCCGCAGGTATTTTGGTTATCATGCTTTTAAAAAAGGCCAGGAAACGATCATCAAAAG
CGTGCTGGAGGGACGGGACACGGTGGCGATGCTTCCGACAGGAGGCGGGAAATCGCTGTGCTATCAGCTCCCAGGGCTTT
TGTTAGACGGCACCGTCCTGATCGTCTCGCCGCTTTTGTCTTTAATGGAAGACCAGGTGCAGCAATTGAAGATGCGCGGA
GAGAAGAGAGCTGCCGCCTTGAACAGCGCTTTGACACACCAAGAAAAAAATGACGTATTAAACCGGCTTCACCGCCTCAA
ATATCTGTACATTTCACCAGAAGCGCTTCAGTCCGGCCAAATGCTGAAAAAGCTTCAATTGCTCAATGTCAGCCTTTTTG
TCGTTGATGAAGCCCACTGCATCTCACAATGGGGGCATGATTTCAGGCCTGATTATTCGAAGCTTGGAGACATCAAGGCG
CTCCTCGGTCATCCCGTCACTCTGGCGCTTACAGCAACGGCAACCGAAGCGACATTAAAGGACATTTCGGAAATCCTGGG
GCTTAAAGCCGCCAATTATTTGATTCATTCGGTCGACCGTCCGAACATTGCGCTTCATATTGAAAAGCTGAGGGATACTG
CTGAGAAGACGGAGCGGCTGACAGGGCTGGTTCAAAAGCTGCAAGGTCCTGGCCTTGTTTATTGCCCGACGAGAAAATGG
GCTGAAGAACTGGCTGACAAGCTCCGTAAAGAAGCAAACTTGAGAACGGGATTTTATCATGGCGGGATGGAGGCAAGCGA
CAGGATGCTGATCCAGCAGCAGTTTATCCGCAATCAGCTTGATGTGGTCTGCTGTACAAACGCCTTCGGTATGGGAGTGG
ACAAGCCGGATATCAGATATGTGATCCACTTTAGCCTCCCGCAGACGATTGAGGCGTATCTGCAGGAAATCGGACGTGCC
GGCAGGGATGGAAAGCGGAGCGTCAGCATTTTGCTGAAGGCTCCGGGAGACGAGGAAATCCAGGAGCAGCTGATTCAAAT
GGAAGCCCTCTCCCAAAGCGATATCGGCTTTTTATACGAAAAGCTTGCAGGAGTGAAAGATGAACGCTGCCGGCGGGAAG
CTCTGCAGCTGGCCGGTTTATCGGAAACGCAAGCCCGCCATTTTCTCCATCTTTATGAGAAGGTGCATCATCTGGGCGGC
GATGGCCGGGCGGTCATTCAGAGGGAGATGGACAGCCGCAGGCAGCTCAAATTGAAAAAAGCGGCGGGATTCGCCGCCGT
CACCGAAACAGAAGGGTGTTTCAGGGAAAGCTTGCTCGCTTATTTTAATGAACAAAAAAAGCCGCCGAAAACGGATGAAA
CAGCGTGCTGCACATCCTGCGGTTTAAGTCTTGAAGCATACGAAGTCAAAGGAGACCGTCCGTCTATGAACAAATTGACA
GCGTGGGAAGAAGAATTGGATACCATATTTGCCGCCAGCTGTGATCGTGTATGCTGA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(216-323)

DEAD/DEAH box helicase (DEAD)

(20-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q65HZ5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recS Bacillus subtilis subsp. subtilis str. 168

58.824

98.996

0.582