Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   EXW45_RS21770 Genome accession   NZ_CP036073
Coordinates   4269232..4270971 (-) Length   579 a.a.
NCBI ID   WP_000947735.1    Uniprot ID   A0A2C4ZIL7
Organism   Bacillus wiedmannii strain JAS08/1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4264232..4275971
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW45_RS21740 (EXW45_22135) - 4264420..4264653 (+) 234 WP_001190196.1 DUF2627 domain-containing protein -
  EXW45_RS21745 (EXW45_22140) - 4264702..4265430 (-) 729 WP_098091990.1 glycerophosphodiester phosphodiesterase -
  EXW45_RS21750 (EXW45_22145) - 4265481..4265627 (+) 147 WP_001247671.1 YycC family protein -
  EXW45_RS21755 (EXW45_22150) - 4265867..4266430 (-) 564 WP_097915865.1 PRK06770 family protein -
  EXW45_RS21760 (EXW45_22155) spo0A 4266733..4267527 (-) 795 WP_033658812.1 sporulation transcription factor Spo0A Regulator
  EXW45_RS21765 (EXW45_22165) spoIVB 4267815..4269113 (-) 1299 WP_097915863.1 SpoIVB peptidase -
  EXW45_RS21770 (EXW45_22170) recN 4269232..4270971 (-) 1740 WP_000947735.1 DNA repair protein RecN Machinery gene
  EXW45_RS21775 (EXW45_22175) argR 4271238..4271687 (-) 450 WP_001032581.1 arginine repressor ArgR -
  EXW45_RS21780 (EXW45_22180) - 4271830..4272669 (-) 840 WP_001274751.1 TlyA family RNA methyltransferase -
  EXW45_RS21785 (EXW45_22185) dxs 4272673..4274565 (-) 1893 WP_046956368.1 1-deoxy-D-xylulose-5-phosphate synthase -
  EXW45_RS21790 (EXW45_22190) ispA 4274868..4275758 (-) 891 WP_000150365.1 (2E,6E)-farnesyl diphosphate synthase -

Sequence

Protein


Download         Length: 579 a.a.        Molecular weight: 65695.79 Da        Isoelectric Point: 4.8574

>NTDB_id=346489 EXW45_RS21770 WP_000947735.1 4269232..4270971(-) (recN) [Bacillus wiedmannii strain JAS08/1]
MLSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRGSAEFVRYGTEKAEIEGLFYVEDDKHPCIEK
AEELDIEIEDGMIILKRDIAANGKSVCRVNGKLVTLSILKEIGKTLVDIHGQHETQDLMNEERHLFMLDHFDGDRIVKQL
GIYQNVYADYEKLKKQLKSLSENEQQMAHRLDLIQFQHEEISKADLKMDEEIELTEERLRISNFEKIYKALGDAYRSLSA
DGQGLDNVRSAMGQMESITHLDEVYQENHDSIANSYYLLEEVAYQLREKLDMMEYDPKRLDEIETRLNEIRMLKRKYGNT
VEEILAYADKIEQEIFTIENKDVHIETTKKQLKELESVILQEATSLSNMRHELAEHLTNAIHQELKELYMEKTKFEVRIM
KREGNAEEPLVEGAPVRLTADGYDHVEFYISTNPGEPLKPLSKVASGGELSRIILALKSIFSKHQGVASVIFDEVDTGVS
GRVAQAIAEKIYRVSVNSQVLCITHLPQVASMADSHLFIRKQVANDRTITSVTVLTMEDKVTEIARMISGVEITDLTTEH
AKELLTQAHHFKQTAEAIQ

Nucleotide


Download         Length: 1740 bp        

>NTDB_id=346489 EXW45_RS21770 WP_000947735.1 4269232..4270971(-) (recN) [Bacillus wiedmannii strain JAS08/1]
TTGTTATCGGAATTATCGATTAGAAACTTTGCTATTATTGAGGCATTAAATATTTCTTTTCAAAAAGGGTTAACGGTTTT
AAGTGGTGAAACAGGGGCCGGAAAATCGATTATTATTGATGCGATTAGTTTACTTGTAGGTGGCCGTGGTTCAGCGGAAT
TTGTTCGATACGGAACAGAAAAAGCTGAGATAGAAGGGCTATTTTATGTAGAAGATGATAAGCATCCGTGTATTGAAAAG
GCAGAAGAGTTGGATATAGAAATAGAAGACGGCATGATTATTTTGAAGCGTGATATCGCTGCAAACGGAAAAAGTGTATG
TCGTGTAAATGGGAAACTGGTCACCCTTAGTATATTAAAGGAAATTGGAAAAACACTTGTTGATATTCATGGGCAGCACG
AAACACAAGATTTAATGAATGAAGAGCGTCATCTATTTATGCTTGATCATTTTGATGGAGATCGCATTGTTAAACAATTG
GGTATATATCAAAATGTATACGCTGACTATGAGAAATTAAAAAAACAGTTAAAATCGTTAAGTGAAAATGAACAACAAAT
GGCGCATCGCTTAGATTTAATTCAATTCCAGCATGAAGAAATCAGTAAGGCGGATTTAAAGATGGATGAAGAAATTGAAT
TAACTGAAGAACGATTGCGAATTTCTAATTTTGAAAAAATTTATAAAGCATTAGGCGATGCATATCGCTCATTAAGCGCT
GACGGACAAGGGTTAGATAATGTACGAAGCGCAATGGGACAAATGGAGAGTATTACACATTTAGATGAAGTTTATCAAGA
AAATCATGATTCAATTGCAAATAGCTACTACTTATTAGAAGAAGTTGCATATCAACTTAGAGAAAAGCTCGATATGATGG
AATATGATCCGAAGCGTTTAGACGAAATTGAAACGCGTTTAAATGAAATTCGTATGCTAAAGAGAAAATATGGAAATACT
GTAGAAGAGATTTTAGCGTATGCTGATAAAATTGAACAAGAAATTTTTACGATTGAAAATAAAGACGTTCATATTGAAAC
GACGAAGAAGCAATTAAAGGAATTAGAAAGTGTTATTCTGCAAGAAGCAACGTCGTTAAGTAATATGCGTCATGAGCTTG
CAGAGCATCTTACAAATGCCATTCATCAGGAATTAAAAGAATTATATATGGAGAAAACAAAATTTGAAGTGAGAATCATG
AAGAGAGAAGGAAATGCTGAAGAGCCTCTTGTTGAGGGTGCCCCGGTAAGACTTACGGCGGATGGCTACGATCATGTGGA
ATTTTATATTTCAACAAATCCAGGTGAGCCGCTAAAACCACTTTCAAAGGTCGCTTCTGGCGGAGAGTTATCTCGTATTA
TTTTAGCTTTAAAAAGCATTTTTTCTAAGCATCAAGGTGTTGCATCTGTTATTTTTGATGAAGTGGATACTGGTGTAAGT
GGTCGAGTTGCACAGGCTATTGCGGAAAAAATTTATCGAGTATCAGTAAACTCGCAAGTACTTTGTATTACGCACTTACC
TCAAGTAGCTTCAATGGCGGATTCACATTTATTTATTCGAAAACAAGTAGCGAATGATCGGACAATTACATCAGTTACCG
TTTTAACTATGGAGGATAAAGTAACAGAAATAGCTCGAATGATTTCTGGTGTGGAAATTACAGATTTAACGACAGAACAT
GCGAAAGAATTACTTACGCAAGCGCATCATTTTAAACAGACAGCAGAGGCTATCCAGTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2C4ZIL7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

59.931

100

0.599

Multiple sequence alignment