Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   EXW45_RS20870 Genome accession   NZ_CP036073
Coordinates   4108166..4108624 (+) Length   152 a.a.
NCBI ID   WP_098091957.1    Uniprot ID   -
Organism   Bacillus wiedmannii strain JAS08/1     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 4103166..4113624
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW45_RS20855 (EXW45_21215) - 4103828..4104064 (+) 237 WP_000283744.1 hypothetical protein -
  EXW45_RS20860 (EXW45_21225) - 4104234..4106342 (-) 2109 WP_046957435.1 polyphosphate kinase -
  EXW45_RS20865 (EXW45_21230) ppx 4106450..4107988 (-) 1539 WP_046956440.1 exopolyphosphatase -
  EXW45_RS20870 (EXW45_21235) kre 4108166..4108624 (+) 459 WP_098091957.1 YkyB family protein Regulator
  EXW45_RS20875 (EXW45_21240) - 4108656..4109318 (-) 663 WP_098091958.1 YkyA family protein -
  EXW45_RS20880 (EXW45_21245) - 4109972..4110613 (-) 642 WP_046957436.1 diguanylate cyclase -
  EXW45_RS20885 (EXW45_21250) - 4110777..4111010 (+) 234 WP_000939452.1 SPP1 phage holin family protein -
  EXW45_RS20890 (EXW45_21255) - 4111042..4111542 (-) 501 WP_046957438.1 hypothetical protein -
  EXW45_RS20895 (EXW45_21260) - 4111968..4113509 (+) 1542 WP_000445747.1 MDR family MFS transporter -

Sequence

Protein


Download         Length: 152 a.a.        Molecular weight: 17784.52 Da        Isoelectric Point: 10.6793

>NTDB_id=346486 EXW45_RS20870 WP_098091957.1 4108166..4108624(+) (kre) [Bacillus wiedmannii strain JAS08/1]
MKPSQPQSQLQNQHSINRLAQSIFVVNRHAKAATNPKYLYWLKKTALERLIAEKKAIKEGLHFSRNPRFSQQQSDVLIRL
GDYFFHIPPTKEDFRILPHLGHLESSYRNPKTTLSLTVAKKTLQDYIGPEALKQEKKLNEPVPWYSRTYTKK

Nucleotide


Download         Length: 459 bp        

>NTDB_id=346486 EXW45_RS20870 WP_098091957.1 4108166..4108624(+) (kre) [Bacillus wiedmannii strain JAS08/1]
ATGAAACCTTCACAACCACAATCTCAATTACAAAACCAACATTCTATTAATCGACTAGCTCAATCTATTTTCGTTGTGAA
TCGTCATGCTAAAGCTGCAACTAATCCGAAGTATTTATACTGGTTAAAAAAGACGGCTTTAGAACGCTTAATTGCTGAAA
AAAAAGCTATTAAAGAAGGATTACATTTTTCTAGAAATCCACGTTTTAGCCAACAACAATCTGATGTTCTTATACGTTTA
GGTGATTATTTTTTCCATATTCCTCCTACCAAAGAAGATTTTCGAATCCTACCACATCTTGGTCATCTTGAATCCTCCTA
TCGAAATCCGAAAACAACCTTATCTTTAACAGTAGCAAAAAAAACACTTCAAGATTATATTGGTCCTGAAGCACTGAAAC
AAGAAAAAAAATTAAATGAACCTGTTCCATGGTATAGTCGTACTTATACAAAAAAATAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(16-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

64.655

76.316

0.493

Multiple sequence alignment