Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   GII88_RS04395 Genome accession   NZ_CP045814
Coordinates   862209..862925 (+) Length   238 a.a.
NCBI ID   WP_003179748.1    Uniprot ID   -
Organism   Bacillus licheniformis strain P8_B2     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 857209..867925
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GII88_RS04380 (GII88_04380) - 857411..858823 (+) 1413 WP_003179741.1 sodium:alanine symporter family protein -
  GII88_RS04385 (GII88_04385) treP 859013..860425 (+) 1413 WP_003179744.1 PTS system trehalose-specific EIIBC component -
  GII88_RS04390 (GII88_04390) treC 860499..862187 (+) 1689 WP_003179746.1 alpha,alpha-phosphotrehalase -
  GII88_RS04395 (GII88_04395) treR 862209..862925 (+) 717 WP_003179748.1 trehalose operon repressor Regulator
  GII88_RS04400 (GII88_04400) - 863032..863724 (+) 693 WP_003179750.1 N-acetyltransferase -
  GII88_RS04405 (GII88_04405) - 863851..865167 (+) 1317 WP_061565905.1 NTTRR-F1 domain -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27733.55 Da        Isoelectric Point: 5.8721

>NTDB_id=346454 GII88_RS04395 WP_003179748.1 862209..862925(+) (treR) [Bacillus licheniformis strain P8_B2]
MKINKYMMIYKQIAEQIDQSILNAGDILPSENDLAEQHDTSRETVRKALNVLAQNGYIQKIKGKGSVVLHREKMQFPVSG
LVSFKELSETLGKETSTTVHEFGLTHPDAYIQKQLRTSGDEEVWRVVRSRNINGERIILDKDYLIRKHVPLLTKEICEDS
IYQYLEDECGLVISYAHKEIVVEPCTAEDQEYLDLNGYEHIVVVKNFVFLDDTTLFQYTESRHRLDKFRFVDFARREK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=346454 GII88_RS04395 WP_003179748.1 862209..862925(+) (treR) [Bacillus licheniformis strain P8_B2]
ATGAAGATCAACAAGTATATGATGATTTACAAACAAATCGCGGAACAAATCGATCAAAGCATACTGAATGCCGGAGATAT
CCTGCCGTCTGAAAACGACCTTGCCGAACAGCACGACACCTCGAGGGAAACCGTTCGGAAAGCGCTGAACGTGCTTGCTC
AGAACGGATATATTCAGAAGATTAAAGGGAAGGGGTCAGTCGTGCTGCACAGGGAGAAAATGCAGTTCCCGGTTTCCGGT
TTGGTCAGCTTTAAGGAGCTTTCAGAAACGCTCGGAAAAGAGACAAGCACGACGGTCCATGAGTTCGGCTTGACGCATCC
GGACGCATATATTCAAAAGCAGCTCCGCACTTCCGGAGATGAAGAGGTATGGCGGGTTGTCAGGTCGCGGAACATCAACG
GAGAGCGTATCATCCTGGATAAAGACTATCTTATCCGCAAACACGTGCCGCTTTTAACGAAAGAAATATGCGAGGACTCG
ATCTATCAATACCTTGAAGATGAATGCGGGCTCGTCATCAGCTATGCTCATAAGGAAATTGTAGTCGAGCCATGTACGGC
AGAGGATCAAGAGTATTTGGATCTGAACGGATACGAGCACATTGTGGTCGTGAAAAATTTCGTTTTTCTTGATGATACGA
CCTTGTTTCAATATACGGAAAGCAGACACCGCCTTGATAAATTCCGGTTTGTCGATTTTGCAAGAAGAGAAAAGTAG

Domains

Predicted by InterProScan.

UTRA domain (UTRA)

(91-229)

Bacterial regulatory proteins, gntR family (GntR)

(6-68)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

41.949

99.16

0.416