Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   EXW41_RS20365 Genome accession   NZ_CP036070
Coordinates   4028026..4028820 (-) Length   264 a.a.
NCBI ID   WP_033658812.1    Uniprot ID   -
Organism   Bacillus wiedmannii strain JAS07/5     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 4023026..4033820
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW41_RS20340 (EXW41_20570) - 4023995..4024228 (+) 234 WP_001190198.1 DUF2627 domain-containing protein -
  EXW41_RS20345 (EXW41_20575) - 4024277..4025005 (-) 729 WP_048546379.1 glycerophosphodiester phosphodiesterase -
  EXW41_RS20350 (EXW41_20580) - 4025056..4025202 (+) 147 WP_001247671.1 YycC family protein -
  EXW41_RS20355 (EXW41_20585) - 4025389..4026915 (-) 1527 WP_088064385.1 glycosyltransferase family 39 protein -
  EXW41_RS20360 (EXW41_20590) - 4027208..4027771 (-) 564 WP_088064386.1 PRK06770 family protein -
  EXW41_RS20365 (EXW41_20595) spo0A 4028026..4028820 (-) 795 WP_033658812.1 sporulation transcription factor Spo0A Regulator
  EXW41_RS20370 (EXW41_20605) spoIVB 4029108..4030406 (-) 1299 WP_048546381.1 SpoIVB peptidase -
  EXW41_RS20375 (EXW41_20610) recN 4030525..4032264 (-) 1740 WP_000947743.1 DNA repair protein RecN Machinery gene
  EXW41_RS20380 (EXW41_20615) argR 4032531..4032980 (-) 450 WP_001032581.1 arginine repressor ArgR -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 29390.02 Da        Isoelectric Point: 6.7576

>NTDB_id=346440 EXW41_RS20365 WP_033658812.1 4028026..4028820(-) (spo0A) [Bacillus wiedmannii strain JAS07/5]
MEKIKVCLVDDNKELVSMLESYVAAQDDMEVIGTAYNGQECLNLLNDKQPDVLVLDIIMPHLDGLAVLEKMRNIERLRQP
SVIMLTAFGQEDVTTKAVDLGASYFILKPFDMENLTSHIRQVSGKANATIKRPLPSFRSATTIDGKPKNLDASITSIIHE
IGVPAHIKGYMYLREAISMVYNDIELLGSITKVLYPDIAKKYNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVSMS
KAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 795 bp        

>NTDB_id=346440 EXW41_RS20365 WP_033658812.1 4028026..4028820(-) (spo0A) [Bacillus wiedmannii strain JAS07/5]
GTGGAGAAAATTAAAGTCTGTCTTGTAGATGATAATAAAGAATTAGTATCAATGCTAGAGAGTTACGTAGCTGCTCAAGA
TGATATGGAAGTAATCGGTACTGCTTATAATGGTCAAGAGTGTTTAAATTTATTAAATGATAAGCAGCCGGATGTACTTG
TTTTAGACATTATTATGCCACATTTAGATGGTTTAGCTGTACTAGAGAAAATGCGAAATATTGAAAGGCTAAGACAGCCT
AGCGTAATTATGTTGACAGCATTTGGACAAGAAGATGTGACGACAAAAGCTGTTGACTTAGGTGCTTCATATTTCATATT
AAAACCATTTGATATGGAGAATTTAACGAGTCATATTCGTCAAGTGAGCGGTAAGGCGAACGCTACCATTAAACGTCCAC
TTCCATCTTTCCGTTCAGCAACTACAATAGATGGAAAACCGAAAAACTTAGACGCGAGCATTACGAGTATCATTCATGAA
ATCGGTGTGCCTGCTCATATTAAAGGGTATATGTACTTAAGGGAAGCAATCTCTATGGTGTACAATGATATCGAATTACT
TGGATCTATTACGAAAGTATTGTATCCAGATATCGCGAAGAAATATAATACAACAGCAAGCCGCGTCGAGCGTGCAATCC
GTCACGCAATTGAAGTAGCATGGAGTCGTGGGAATATTGATTCTATTTCGTCCTTATTCGGTTATACAGTATCCATGTCA
AAAGCAAAACCTACGAATTCCGAGTTCATCGCAATGGTTGCGGATAAGCTGAGACTTGAACATAAGGCTAGCTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-119)

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(154-257)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

80.15

100

0.811

Multiple sequence alignment