Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   EXW41_RS19500 Genome accession   NZ_CP036070
Coordinates   3875989..3876423 (-) Length   144 a.a.
NCBI ID   WP_000811502.1    Uniprot ID   A0A5C5ACH0
Organism   Bacillus wiedmannii strain JAS07/5     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3870989..3881423
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW41_RS19480 (EXW41_19690) - 3871387..3871944 (+) 558 WP_060488391.1 PadR family transcriptional regulator -
  EXW41_RS19485 (EXW41_19695) - 3872135..3872566 (-) 432 WP_046957439.1 NUDIX hydrolase -
  EXW41_RS19490 (EXW41_19700) metE 3873237..3875525 (+) 2289 WP_088064326.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  EXW41_RS19495 (EXW41_19705) comJ 3875563..3875952 (-) 390 WP_048546163.1 competence protein ComJ -
  EXW41_RS19500 (EXW41_19710) nucA/comI 3875989..3876423 (-) 435 WP_000811502.1 DNA-entry nuclease Machinery gene
  EXW41_RS19505 (EXW41_19715) - 3876660..3877409 (+) 750 WP_000387495.1 DUF3967 domain-containing protein -
  EXW41_RS19510 (EXW41_19720) kinB 3877462..3878736 (-) 1275 WP_000420378.1 sporulation sensor histidine kinase KinB -
  EXW41_RS19515 (EXW41_19725) - 3879046..3879246 (+) 201 WP_000929285.1 hypothetical protein -
  EXW41_RS19520 (EXW41_19730) - 3879370..3880533 (+) 1164 WP_088064327.1 aminotransferase A -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16010.38 Da        Isoelectric Point: 8.4331

>NTDB_id=346439 EXW41_RS19500 WP_000811502.1 3875989..3876423(-) (nucA/comI) [Bacillus wiedmannii strain JAS07/5]
MKQLKGIIISIIAILSIVVAVYEVLVPEETSIKKTNAYDQVLEFPKERYPETGKHITDAIKEGHSEVCTIDRGGAADRRK
LSLAPYPSKKGYDRDEWPMAMCKEGGKGAHIEYISPADNRGAGSWVGNKLDKYPDGTRVKFDVK

Nucleotide


Download         Length: 435 bp        

>NTDB_id=346439 EXW41_RS19500 WP_000811502.1 3875989..3876423(-) (nucA/comI) [Bacillus wiedmannii strain JAS07/5]
ATGAAGCAATTAAAAGGTATTATCATTTCAATTATTGCAATTCTTTCTATTGTAGTAGCGGTTTATGAAGTACTTGTTCC
AGAGGAAACAAGTATCAAAAAAACGAATGCATATGATCAAGTTCTAGAATTTCCGAAAGAGCGATATCCAGAGACAGGGA
AACATATTACGGATGCTATAAAAGAAGGACATTCAGAAGTTTGTACAATCGACCGTGGTGGTGCTGCGGATAGAAGAAAA
TTATCGTTAGCTCCATACCCATCAAAAAAAGGGTATGATCGTGATGAATGGCCAATGGCGATGTGTAAAGAAGGCGGAAA
AGGGGCACATATTGAATATATAAGTCCAGCAGATAACCGCGGAGCAGGGTCTTGGGTAGGAAATAAGTTAGATAAATACC
CAGATGGTACGCGTGTGAAATTTGACGTAAAGTAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(48-139)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5C5ACH0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

71.171

77.083

0.549

Multiple sequence alignment