Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   EXW41_RS19450 Genome accession   NZ_CP036070
Coordinates   3865946..3866404 (+) Length   152 a.a.
NCBI ID   WP_000804864.1    Uniprot ID   -
Organism   Bacillus wiedmannii strain JAS07/5     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 3860946..3871404
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW41_RS19435 (EXW41_19640) - 3861608..3861844 (+) 237 WP_000283744.1 hypothetical protein -
  EXW41_RS19440 (EXW41_19650) - 3862014..3864122 (-) 2109 WP_088064322.1 polyphosphate kinase -
  EXW41_RS19445 (EXW41_19655) ppx 3864230..3865768 (-) 1539 WP_046956440.1 exopolyphosphatase -
  EXW41_RS19450 (EXW41_19660) kre 3865946..3866404 (+) 459 WP_000804864.1 YkyB family protein Regulator
  EXW41_RS19455 (EXW41_19665) - 3866436..3867098 (-) 663 WP_088064323.1 YkyA family protein -
  EXW41_RS19460 (EXW41_19670) - 3867758..3868399 (-) 642 WP_087985096.1 diguanylate cyclase -
  EXW41_RS19465 (EXW41_19675) - 3868563..3868796 (+) 234 WP_000939452.1 SPP1 phage holin family protein -
  EXW41_RS19470 (EXW41_19680) - 3868828..3869328 (-) 501 WP_088064324.1 hypothetical protein -
  EXW41_RS19475 (EXW41_19685) - 3869754..3871295 (+) 1542 WP_088064325.1 MDR family MFS transporter -

Sequence

Protein


Download         Length: 152 a.a.        Molecular weight: 17757.49 Da        Isoelectric Point: 10.6793

>NTDB_id=346438 EXW41_RS19450 WP_000804864.1 3865946..3866404(+) (kre) [Bacillus wiedmannii strain JAS07/5]
MKPSQPQSQLQNQHSINRLAQSIFVVNRHAKAATNPKYLYWLKKTALERLIAEKKAIKEGLHFSRNPRFSQQQSDVLIRL
GDYFFHIPPTKEDFRILPHLGHLESSYRNPKTTLSLTVAKKTLQDYIGPEALKQEKKLSEPVPWYSRTYTKK

Nucleotide


Download         Length: 459 bp        

>NTDB_id=346438 EXW41_RS19450 WP_000804864.1 3865946..3866404(+) (kre) [Bacillus wiedmannii strain JAS07/5]
ATGAAGCCTTCACAACCACAATCTCAATTACAAAACCAACATTCTATTAATCGACTAGCTCAATCTATTTTCGTTGTGAA
TCGTCATGCTAAAGCTGCAACTAATCCGAAGTATTTATACTGGTTAAAAAAGACGGCTTTAGAACGCTTAATTGCTGAGA
AAAAAGCTATTAAAGAAGGATTACATTTTTCTAGAAATCCACGTTTTAGCCAACAACAATCTGATGTTCTTATACGTTTA
GGTGATTATTTTTTCCATATTCCTCCTACCAAAGAAGATTTTCGAATCCTACCACATCTTGGTCATCTTGAATCCTCCTA
TCGAAATCCGAAAACAACCTTATCTTTAACAGTAGCAAAAAAAACACTTCAAGATTATATTGGTCCTGAAGCATTGAAAC
AAGAAAAAAAATTAAGTGAACCTGTTCCATGGTATAGTCGTACTTATACAAAAAAATAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(16-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

64.655

76.316

0.493

Multiple sequence alignment