Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   EXW41_RS07680 Genome accession   NZ_CP036070
Coordinates   1474017..1474619 (-) Length   200 a.a.
NCBI ID   WP_046958934.1    Uniprot ID   -
Organism   Bacillus wiedmannii strain JAS07/5     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1469017..1479619
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW41_RS07660 (EXW41_07695) dnaD 1469317..1470024 (+) 708 WP_000728534.1 DNA replication protein DnaD -
  EXW41_RS07665 (EXW41_07700) nth 1470040..1470687 (+) 648 WP_046958931.1 endonuclease III -
  EXW41_RS07670 (EXW41_07705) - 1470691..1471209 (+) 519 WP_087985560.1 YpoC family protein -
  EXW41_RS07675 (EXW41_07710) - 1471231..1473951 (-) 2721 WP_088062717.1 PBP1A family penicillin-binding protein -
  EXW41_RS07680 (EXW41_07715) recU 1474017..1474619 (-) 603 WP_046958934.1 Holliday junction resolvase RecU Machinery gene
  EXW41_RS07685 (EXW41_07720) - 1474723..1475748 (+) 1026 WP_087985630.1 DUF2515 domain-containing protein -
  EXW41_RS07690 - 1475906..1476082 (-) 177 WP_087985562.1 phage portal protein -
  EXW41_RS07695 (EXW41_07725) - 1476168..1476410 (+) 243 WP_001252041.1 hypothetical protein -
  EXW41_RS07700 (EXW41_07730) - 1476426..1476770 (+) 345 WP_000872967.1 YppE family protein -
  EXW41_RS07705 (EXW41_07735) - 1476798..1476989 (-) 192 WP_000242661.1 YppF family protein -
  EXW41_RS07710 (EXW41_07740) - 1477167..1477772 (+) 606 WP_088062718.1 YppG family protein -
  EXW41_RS07715 (EXW41_07745) - 1477928..1478326 (+) 399 WP_087985564.1 CotD family spore coat protein -
  EXW41_RS07720 (EXW41_07750) - 1478383..1478937 (+) 555 WP_000862919.1 DUF1273 domain-containing protein -
  EXW41_RS07725 (EXW41_07755) gpsB 1479035..1479373 (+) 339 WP_000622425.1 cell division regulator GpsB -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 23371.65 Da        Isoelectric Point: 9.2649

>NTDB_id=346430 EXW41_RS07680 WP_046958934.1 1474017..1474619(-) (recU) [Bacillus wiedmannii strain JAS07/5]
MTIRYPNGKRYNQASQPHKTPIKKHTYSNRGMSLEEELNETNEYYLTHNIACVHKKPTPLQIVKVDYPARSAAVVKEAYF
KQPSTTDYNGVYKGKYIDFEAKETKNKTSFPLQNFHLHQIEHMKQVIVHDGIAFVIIKFTLFDELYLLDAKHIIAFWNRQ
NTGGRKSITKEEIEEHGSLLSCGYHPRIDYIRVLDTVYFS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=346430 EXW41_RS07680 WP_046958934.1 1474017..1474619(-) (recU) [Bacillus wiedmannii strain JAS07/5]
ATGACCATTCGTTACCCAAACGGAAAACGGTACAATCAAGCTTCACAACCTCATAAAACACCAATTAAAAAACATACTTA
TAGTAATAGAGGTATGTCCCTTGAAGAGGAATTGAATGAAACAAATGAATATTACTTAACCCATAATATTGCATGTGTAC
ATAAAAAACCTACACCTCTTCAAATTGTAAAAGTAGATTACCCCGCTCGAAGTGCTGCAGTGGTAAAAGAAGCGTATTTT
AAACAACCTTCTACAACAGATTACAACGGTGTATACAAAGGGAAATACATCGATTTTGAAGCGAAAGAAACAAAAAATAA
AACCAGCTTTCCACTTCAAAACTTCCACCTTCATCAAATTGAACATATGAAGCAAGTAATCGTTCATGATGGAATTGCAT
TTGTTATTATTAAATTTACACTTTTTGATGAACTTTATTTACTAGATGCAAAACATATTATTGCATTTTGGAATCGTCAA
AATACTGGTGGACGGAAATCGATTACGAAAGAAGAAATAGAAGAGCATGGATCTTTATTATCATGCGGTTATCACCCTCG
GATTGATTATATCCGTGTACTAGACACGGTTTATTTTTCGTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(30-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

63

100

0.63

Multiple sequence alignment