Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   EXW41_RS06360 Genome accession   NZ_CP036070
Coordinates   1232115..1232438 (-) Length   107 a.a.
NCBI ID   WP_088062549.1    Uniprot ID   -
Organism   Bacillus wiedmannii strain JAS07/5     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1227115..1237438
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW41_RS06335 (EXW41_06385) - 1227360..1228646 (+) 1287 WP_088062541.1 D-alanyl-D-alanine carboxypeptidase family protein -
  EXW41_RS06340 (EXW41_06390) sipW 1228840..1229409 (+) 570 WP_088062543.1 signal peptidase I SipW -
  EXW41_RS06345 (EXW41_06395) - 1229476..1230066 (+) 591 WP_088062545.1 TasA family protein -
  EXW41_RS06350 (EXW41_06400) - 1230223..1231038 (+) 816 WP_088062547.1 DUF4047 domain-containing protein -
  EXW41_RS06355 (EXW41_06405) calY 1231448..1232041 (+) 594 WP_000053730.1 biofilm matrix protein CalY -
  EXW41_RS06360 (EXW41_06410) sinR 1232115..1232438 (-) 324 WP_088062549.1 helix-turn-helix domain-containing protein Regulator
  EXW41_RS06365 (EXW41_06415) - 1232518..1232652 (-) 135 WP_088062551.1 anti-repressor SinI family protein -
  EXW41_RS06370 (EXW41_06420) inhA1 1232995..1235382 (+) 2388 WP_001035922.1 M6 family metalloprotease immune inhibitor InhA1 -
  EXW41_RS06375 (EXW41_06425) - 1235554..1236921 (+) 1368 WP_060489442.1 aldehyde dehydrogenase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12359.19 Da        Isoelectric Point: 8.5614

>NTDB_id=346428 EXW41_RS06360 WP_088062549.1 1232115..1232438(-) (sinR) [Bacillus wiedmannii strain JAS07/5]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTKETNLDSEWTQLV
KDAMNSGVSKEQFREFLEFTKWKHDQK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=346428 EXW41_RS06360 WP_088062549.1 1232115..1232438(-) (sinR) [Bacillus wiedmannii strain JAS07/5]
ATGATTGGAGAACGTATAAAACGCCTTCGCTTACAAAAAGGTATTTCATTAACTGAACTTGCCGAAAAAGCTGGTGTTGC
TAAATCTTACATTAGTTCTATAGAGCGAAATTTACAAAAAAACCCTTCCATTCAGTTTCTTGAAAAGATCGCAGCAGTTC
TACAAATTCCAGTTGATACTTTACTTCATGATGAAACAACAAAGGAAACTAACCTAGACTCCGAATGGACACAGCTTGTT
AAAGATGCAATGAACTCTGGTGTCTCCAAAGAACAATTTCGTGAATTTCTTGAATTTACAAAATGGAAGCACGATCAAAA
ATAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-60)

Anti-repressor SinI (SinI)

(72-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

67.89

100

0.692

Multiple sequence alignment