Detailed information NTG0346422

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: EXW41_RS05810
• Genome accession: NZ_CP036070
• Coordinates: 1125728..1128328 (+)
• Length: 866 a.a.
• NCBI ID: WP_088062459.1
• Uniprot ID: -
• Organism: Bacillus wiedmannii strain JAS07/5
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 1120728..1133328

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EXW41_RS05775 (EXW41_05820)	prsA	1121501..1122358 (-)	858	WP_060489315.1	peptidylprolyl isomerase PrsA	-
EXW41_RS05780 (EXW41_05825)	-	1122489..1122620 (-)	132	WP_001120851.1	DUF3941 domain-containing protein	-
EXW41_RS05785 (EXW41_05830)	-	1122721..1123578 (+)	858	WP_060489317.1	YitT family protein	-
EXW41_RS05790 (EXW41_05835)	-	1123604..1123801 (-)	198	WP_046957006.1	DUF3813 domain-containing protein	-
EXW41_RS05795 (EXW41_05840)	-	1123802..1123942 (-)	141	WP_000516816.1	hypothetical protein	-
EXW41_RS05800 (EXW41_05845)	-	1124048..1124857 (-)	810	WP_048545178.1	Cof-type HAD-IIB family hydrolase	-
EXW41_RS05805 (EXW41_05850)	-	1125349..1125528 (+)	180	WP_000531420.1	YjzC family protein	-
EXW41_RS05810 (EXW41_05855)	clpC	1125728..1128328 (+)	2601	WP_088062459.1	ATP-dependent chaperone ClpB	Regulator
EXW41_RS05815 (EXW41_05860)	-	1128366..1128548 (-)	183	WP_001211113.1	YjzD family protein	-
EXW41_RS05820 (EXW41_05865)	-	1128705..1129439 (+)	735	WP_088062461.1	alpha/beta hydrolase	-
EXW41_RS05825 (EXW41_05870)	-	1129469..1130341 (+)	873	WP_137013517.1	NAD(P)-dependent oxidoreductase	-
EXW41_RS05830 (EXW41_05875)	comZ	1130395..1130571 (+)	177	WP_001003337.1	ComZ family protein	Regulator
EXW41_RS05835 (EXW41_05880)	fabH	1130803..1131735 (+)	933	WP_001100551.1	beta-ketoacyl-ACP synthase III	-
EXW41_RS05840 (EXW41_05885)	fabF	1131767..1133005 (+)	1239	WP_000412643.1	beta-ketoacyl-ACP synthase II	-

Sequence

Protein

• Length: 866 a.a.
• Molecular weight: 97460.50 Da
• Isoelectric Point: 5.1961

>NTDB_id=346422 EXW41_RS05810 WP_088062459.1 1125728..1128328(+) (clpC) [Bacillus wiedmannii strain JAS07/5]
MDLNQMTTKTQEAIMSAQSLAVSHHHQEVDTVHLLFTLLEEQDGLAVRIFQKMNVDIEALKQGAESLIKKKPSVTGSGAE
VGKLYITGALQQLLVRAGKEAEKLQDEYISVEHVLLAFSEEKGDINQLLTRFHITKDNLLQSLMTVRGNQRVTSQNPEAT
YEALEKYGRDLVAEVRAGKIDPVIGRDSEIRRVIRILSRKTKNNPVLIGEPGVGKTAIVEGLAQRIVKKDVPEGLKDRTI
FALDMSALVAGAKFRGEFEERLQAVLNEIKKSEGRILLFIDELHTIVGAGKTEGAMDAGNMLKPMLARGELHCIGATTLD
EYRKYIEKDPALERRFQQVLAEEPTVEDTISILRGLKERFEIYHGVNIHDRAIVAASVLSDRYISDRFLPDKAIDLVDEA
CATIRTEIDSMPTELDEVTRRIMQLEIEEAALGKEKDFGSQERLKTLQRELSDLKEVASGMRAKWEKEKEDIHKVRDLRE
HLERLRRELEEAEGNYDLNKAAELRHGKIPAIEKELKEAEEMGAHNKQENRLLREEVSEEEIADIVSRWTGIPVAKLVEG
EREKLLRLEQILSERVIGQEEAVSLVSDAVLRARAGIKDPNRPIGSFIFLGPTGVGKTELAKTLAQSLFDSEEQMIRIDM
SEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAHPEVFNILLQMLDDGRITDSQGRTVDFKNTVI
IMTSNIGSAHLLDGLEADGSIKEESRELVMGQLRGHFRPEFLNRVDEIILFKPLTTNEIKGIVDKIVKELQGRLADRHIT
VELTDAAREFVVEAGFDPMYGARPLKRYVQRQVETKLARELIAGTITDNSHVVVDVENNELVVHVK

Nucleotide

• Length: 2601 bp

>NTDB_id=346422 EXW41_RS05810 WP_088062459.1 1125728..1128328(+) (clpC) [Bacillus wiedmannii strain JAS07/5]
ATGGACTTAAATCAAATGACAACAAAAACACAAGAGGCGATTATGAGTGCCCAATCTTTAGCGGTATCTCATCATCATCA
AGAAGTAGATACTGTTCATCTCTTGTTTACATTATTAGAAGAGCAAGATGGATTAGCAGTGCGTATTTTTCAAAAAATGA
ATGTCGATATAGAAGCGTTAAAGCAAGGCGCCGAAAGTTTAATTAAGAAAAAACCTTCTGTAACGGGAAGCGGTGCAGAA
GTAGGAAAATTATATATAACAGGTGCTCTGCAACAACTACTTGTAAGAGCAGGAAAAGAAGCAGAGAAATTGCAAGATGA
ATACATTTCAGTTGAACATGTATTGCTTGCTTTTTCAGAAGAAAAAGGCGATATAAATCAATTACTTACAAGATTTCACA
TTACGAAAGATAACTTATTACAGTCTTTAATGACAGTTCGGGGGAATCAAAGAGTGACTAGTCAAAATCCAGAAGCAACT
TATGAAGCGTTGGAAAAATATGGTCGTGATTTAGTGGCGGAAGTGAGAGCAGGGAAAATTGATCCTGTTATCGGTCGCGA
TAGTGAAATTCGACGTGTAATCCGCATTCTTTCACGTAAAACGAAAAACAACCCGGTTTTAATTGGTGAACCCGGTGTTG
GTAAAACAGCAATCGTTGAAGGATTAGCACAGCGTATTGTGAAGAAGGATGTACCAGAAGGATTAAAAGATAGAACAATC
TTCGCATTAGATATGAGTGCGCTTGTAGCTGGAGCGAAATTCCGTGGTGAGTTTGAAGAGCGTCTGCAAGCTGTATTAAA
TGAAATTAAAAAGAGTGAAGGTCGCATTTTATTATTCATTGATGAACTTCACACAATCGTCGGCGCTGGTAAAACAGAAG
GTGCGATGGACGCAGGAAATATGTTAAAACCGATGCTTGCGCGTGGTGAACTGCATTGTATCGGGGCGACAACGTTAGAT
GAGTATCGTAAATATATTGAGAAAGATCCAGCGCTAGAAAGACGTTTCCAACAAGTATTAGCAGAAGAACCAACTGTTGA
AGATACAATTTCCATTTTACGTGGTTTAAAAGAGCGTTTTGAAATTTATCATGGTGTAAATATTCATGACCGCGCGATTG
TAGCAGCATCCGTTTTATCAGATCGATATATTTCGGATCGTTTCTTACCAGATAAAGCGATCGATCTTGTTGACGAAGCG
TGTGCAACAATTCGAACAGAGATTGATTCTATGCCAACAGAATTAGATGAAGTAACGCGCCGCATTATGCAGCTGGAAAT
TGAAGAAGCGGCTCTTGGAAAAGAGAAGGACTTTGGTAGCCAAGAACGCCTGAAAACGTTGCAACGTGAATTATCGGATT
TAAAAGAAGTTGCAAGTGGTATGAGAGCGAAATGGGAAAAAGAAAAAGAAGATATTCATAAAGTGCGTGACTTACGTGAA
CATTTAGAGCGTCTGCGCCGTGAATTAGAAGAAGCAGAAGGTAATTACGATTTAAATAAAGCAGCGGAACTTCGTCACGG
GAAAATTCCTGCAATTGAAAAAGAGTTAAAAGAAGCAGAAGAAATGGGTGCACATAATAAACAAGAGAATCGCTTATTAC
GTGAGGAAGTAAGTGAAGAAGAGATTGCTGATATTGTTTCACGCTGGACTGGTATTCCTGTCGCAAAACTCGTTGAAGGT
GAACGCGAGAAATTATTACGCTTAGAGCAAATTTTATCAGAGCGTGTCATCGGACAAGAGGAAGCGGTAAGCTTAGTATC
AGACGCAGTTCTTCGTGCACGCGCTGGTATTAAAGACCCGAACCGTCCAATTGGTTCCTTCATCTTCTTAGGACCGACAG
GTGTTGGTAAAACAGAACTTGCAAAAACGTTAGCGCAGTCTTTATTCGATAGTGAAGAGCAAATGATTCGTATCGACATG
TCTGAGTATATGGAGAAACATGCTGTGTCACGCTTAATTGGTGCGCCTCCTGGATATGTTGGATATGAAGAGGGCGGTCA
ATTAACAGAAGCGGTAAGACGTAAACCGTATTCAGTTATTTTGTTAGACGAAATCGAAAAAGCACATCCAGAAGTATTCA
ACATTTTATTACAAATGTTAGATGATGGACGCATTACAGATTCTCAAGGACGTACAGTAGACTTTAAAAACACGGTTATT
ATTATGACTTCAAATATTGGATCTGCTCATTTGTTAGATGGATTAGAAGCAGATGGCTCAATTAAAGAGGAATCAAGAGA
ACTTGTAATGGGGCAATTAAGAGGACATTTCCGACCAGAGTTTTTAAATCGTGTCGATGAAATTATTTTATTCAAACCTC
TTACAACGAATGAAATTAAAGGTATTGTTGATAAAATTGTAAAAGAATTACAAGGTCGTTTAGCTGACCGTCATATTACA
GTAGAATTAACAGACGCAGCGAGAGAATTTGTTGTAGAAGCTGGCTTTGATCCGATGTACGGAGCTCGTCCATTAAAACG
ATATGTACAGCGTCAAGTTGAGACGAAATTAGCGAGAGAATTAATTGCAGGAACAATTACTGATAACAGTCACGTAGTTG
TTGATGTAGAAAATAACGAATTAGTCGTTCATGTAAAGTAA

Domains

Predicted by InterproScan.

• AAA domain (Cdc48 subfamily) (AAA_2) (602-768)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (774-854)

• ATPase family associated with various cellular activities (AAA) (AAA) (206-339)

• AAA lid domain (AAA_lid_9) (345-447)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (97-148)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (17-68)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Bacillus subtilis subsp. subtilis str. 168	47.543	100	0.48
clpC	Lactococcus lactis subsp. cremoris KW2	47.059	82.448	0.388