Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   EXW39_RS25650 Genome accession   NZ_CP036064
Coordinates   5029159..5030508 (-) Length   449 a.a.
NCBI ID   WP_215590406.1    Uniprot ID   -
Organism   Bacillus mycoides strain JAS06/3     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5024159..5035508
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW39_RS30010 (EXW39_26145) - 5026732..5026845 (-) 114 Protein_5021 YafY family transcriptional regulator -
  EXW39_RS25630 (EXW39_26150) - 5026796..5027164 (+) 369 WP_227590941.1 VOC family protein -
  EXW39_RS25635 (EXW39_26155) raiA 5027268..5027810 (-) 543 WP_002089603.1 ribosome-associated translation inhibitor RaiA -
  EXW39_RS25640 (EXW39_26160) cspC 5028131..5028328 (-) 198 WP_001990088.1 cold shock protein CspC -
  EXW39_RS25645 (EXW39_26165) - 5028455..5029159 (-) 705 WP_215590405.1 ComF family protein -
  EXW39_RS25650 (EXW39_26170) comFA 5029159..5030508 (-) 1350 WP_215590406.1 ATP-dependent helicase ComFA Machinery gene
  EXW39_RS25655 (EXW39_26175) - 5030638..5031957 (-) 1320 WP_215590408.1 C40 family peptidase -
  EXW39_RS25660 (EXW39_26180) - 5032221..5032535 (-) 315 WP_002089608.1 helix-turn-helix domain-containing protein -
  EXW39_RS25665 (EXW39_26185) - 5032709..5033551 (-) 843 WP_002016143.1 DegV family protein -
  EXW39_RS25670 (EXW39_26190) - 5033790..5034425 (+) 636 WP_061689030.1 YigZ family protein -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 50897.26 Da        Isoelectric Point: 9.4507

>NTDB_id=346404 EXW39_RS25650 WP_215590406.1 5029159..5030508(-) (comFA) [Bacillus mycoides strain JAS06/3]
MLAGRQLLLEELSSDLQNKLDHLKRNQDVVCVQGVIKKSSKYMCQRCGNIEQRLFVSLLCKRCNEVCTYCRKCITMGRVS
ECTVLVRGIAEISGESYLNPLQWEGVLSDGQELAAQSVVDAVKQKESFFIWAVCGAGKTEMLFRGIAEALQKGERVCIAT
PRTDVVLELAPRLQEVFPNINVAALYGGSLDREKDAALIVATTHQLLRYYRAFHVMIVDEIDAFPYHADKMLQYAVNEAM
KERAARIYLTATPDEKWKRKLRSGKQKGVIISGRYHRHPLPVPIFRWCGNWKKGLIRKKIPRALLQWLNLYLSKRYPIFL
FVPHVRYVEEISQLLKSLNNQIDGVHAEDPARKEKVAAFRKGEIPLLVTTTILERGVTVKNLQVAVLGAEEEIFSESALV
QIAGRAGRSSDEPHGDVIYFHYGKTEAMVRAKKHIQSMNKNAKEQGLID

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=346404 EXW39_RS25650 WP_215590406.1 5029159..5030508(-) (comFA) [Bacillus mycoides strain JAS06/3]
ATGTTAGCTGGTAGACAGTTACTGTTAGAAGAACTCTCTTCAGATTTGCAGAATAAATTGGATCATCTGAAAAGGAATCA
AGACGTCGTTTGTGTGCAAGGGGTAATTAAGAAGTCTTCAAAATATATGTGTCAGCGCTGCGGAAATATAGAGCAGCGAC
TATTTGTATCATTGCTATGTAAAAGGTGCAATGAAGTATGTACGTATTGCCGGAAATGTATAACGATGGGCAGGGTAAGT
GAATGTACTGTACTTGTTCGCGGGATTGCTGAAATAAGCGGAGAAAGTTATTTGAATCCGTTACAGTGGGAAGGCGTTTT
GTCTGACGGTCAGGAGTTAGCTGCGCAAAGTGTCGTTGACGCTGTTAAGCAGAAAGAATCATTTTTTATTTGGGCGGTGT
GCGGGGCTGGAAAAACAGAAATGTTGTTTCGCGGAATTGCAGAGGCACTACAAAAGGGAGAAAGAGTTTGTATTGCAACG
CCGAGAACGGACGTTGTACTTGAATTAGCACCAAGATTACAAGAAGTGTTTCCAAATATAAATGTAGCTGCTTTATACGG
AGGGAGTTTAGACCGAGAAAAAGATGCGGCGTTAATCGTTGCAACTACACATCAATTGTTACGTTATTATAGGGCGTTCC
ATGTCATGATTGTAGATGAGATAGATGCTTTTCCGTATCATGCAGATAAGATGTTGCAGTATGCAGTAAACGAAGCGATG
AAAGAGAGGGCAGCACGTATTTATTTAACTGCAACTCCAGATGAAAAGTGGAAGCGTAAGTTGCGAAGTGGTAAGCAAAA
AGGGGTTATTATTTCAGGACGATACCATCGTCATCCATTGCCAGTTCCGATATTTCGGTGGTGCGGAAATTGGAAAAAGG
GTCTTATACGTAAAAAAATTCCTCGTGCTTTATTACAATGGTTAAATCTGTACTTATCGAAACGATACCCCATTTTTCTA
TTTGTTCCTCATGTGCGATATGTAGAAGAAATTAGCCAGTTATTAAAATCATTAAACAATCAAATTGACGGTGTGCATGC
AGAAGATCCGGCGAGAAAAGAGAAGGTAGCAGCTTTCAGAAAAGGAGAAATTCCTTTATTAGTTACAACGACGATTTTGG
AACGAGGAGTAACTGTGAAAAATTTACAAGTCGCAGTTTTAGGGGCTGAGGAAGAAATATTTTCAGAAAGTGCTCTCGTT
CAAATTGCAGGGCGTGCTGGCAGAAGCTCTGATGAACCGCATGGAGATGTTATTTATTTTCATTATGGAAAGACAGAGGC
GATGGTGCGTGCGAAAAAACATATTCAAAGTATGAATAAGAATGCTAAAGAACAAGGATTGATAGATTGA

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(107-254)

Helicase conserved C-terminal domain (Helicase_C)

(313-409)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

50.567

98.218

0.497
  comFA Latilactobacillus sakei subsp. sakei 23K

41.206

88.641

0.365

Multiple sequence alignment