Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   EXW39_RS20820 Genome accession   NZ_CP036064
Coordinates   4139327..4140121 (-) Length   264 a.a.
NCBI ID   WP_002015081.1    Uniprot ID   R8I3Q7
Organism   Bacillus mycoides strain JAS06/3     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 4134327..4145121
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW39_RS20790 (EXW39_21220) - 4134614..4135066 (-) 453 WP_002033951.1 YrhA family protein -
  EXW39_RS20795 (EXW39_21230) - 4135271..4135744 (-) 474 WP_252188924.1 SMI1/KNR4 family protein -
  EXW39_RS20800 (EXW39_21235) - 4135825..4136394 (-) 570 WP_090813294.1 DUF1629 domain-containing protein -
  EXW39_RS20805 (EXW39_21240) - 4136434..4137732 (-) 1299 WP_215590176.1 WXG100 family type VII secretion target -
  EXW39_RS20810 (EXW39_21245) - 4137897..4138574 (-) 678 WP_012261695.1 hypothetical protein -
  EXW39_RS20815 (EXW39_21250) - 4138868..4139173 (-) 306 WP_252188898.1 site-specific integrase -
  EXW39_RS20820 (EXW39_21255) spo0A 4139327..4140121 (-) 795 WP_002015081.1 sporulation transcription factor Spo0A Regulator
  EXW39_RS20825 (EXW39_21265) spoIVB 4140408..4141700 (-) 1293 WP_002015079.1 SpoIVB peptidase -
  EXW39_RS20830 (EXW39_21270) recN 4141820..4143559 (-) 1740 WP_002088564.1 DNA repair protein RecN Machinery gene
  EXW39_RS20835 (EXW39_21275) argR 4143830..4144279 (-) 450 WP_002015076.1 arginine repressor ArgR -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 29525.32 Da        Isoelectric Point: 7.1180

>NTDB_id=346392 EXW39_RS20820 WP_002015081.1 4139327..4140121(-) (spo0A) [Bacillus mycoides strain JAS06/3]
MEKIKVCLVDDNKELVSMLESYVAAQDDMEVIGIAYNGQECLNLLKEKQPDILVLDIIMPHLDGLAVLEKMRHIERLRQP
SVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLTSHIRQVSGKESATIKRPLPSFRSATTIDGKPKNLDASITSIIHE
IGVPAHIKGYMYLREAISMVYNDIELLGSITKVLYPDIAKKYNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVSMS
KAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 795 bp        

>NTDB_id=346392 EXW39_RS20820 WP_002015081.1 4139327..4140121(-) (spo0A) [Bacillus mycoides strain JAS06/3]
GTGGAGAAAATTAAAGTATGTCTTGTGGATGATAATAAAGAATTGGTATCGATGCTAGAGAGTTATGTTGCTGCCCAAGA
TGATATGGAAGTTATCGGAATTGCTTACAATGGTCAAGAATGTTTAAACTTATTGAAAGAAAAGCAGCCTGATATACTCG
TTTTAGACATTATTATGCCACATTTAGATGGTCTAGCTGTGCTAGAGAAAATGCGACATATTGAAAGGTTAAGACAACCT
AGCGTTATTATGTTGACAGCATTCGGACAAGAAGATGTGACGAAAAAAGCGGTTGATTTAGGGGCATCATATTTCATATT
AAAACCATTTGATATGGAGAATTTAACAAGTCATATTCGTCAAGTTAGTGGTAAGGAAAGTGCTACTATTAAACGTCCAT
TACCATCTTTCCGATCAGCAACAACGATAGATGGAAAACCGAAAAACTTAGATGCGAGTATTACAAGTATCATTCATGAA
ATTGGTGTGCCCGCTCATATTAAAGGGTACATGTACTTACGAGAAGCAATCTCTATGGTGTACAATGATATCGAATTACT
AGGATCTATTACGAAAGTATTATATCCAGATATTGCAAAGAAATATAATACAACAGCAAGCCGTGTCGAGCGCGCAATCC
GTCACGCAATTGAAGTAGCTTGGAGCCGTGGGAATATTGATTCTATTTCGTCCTTATTTGGTTATACTGTATCCATGTCA
AAAGCAAAACCTACGAATTCCGAGTTCATCGCAATGGTTGCGGATAAGCTAAGACTTGAACATAAGGCTTCGTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(154-257)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB R8I3Q7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

80.899

100

0.818

Multiple sequence alignment