Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   EXW39_RS19845 Genome accession   NZ_CP036064
Coordinates   3967776..3968234 (+) Length   152 a.a.
NCBI ID   WP_215590130.1    Uniprot ID   -
Organism   Bacillus mycoides strain JAS06/3     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 3962776..3973234
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW39_RS19830 (EXW39_20235) - 3963440..3963676 (+) 237 WP_002014830.1 hypothetical protein -
  EXW39_RS19835 (EXW39_20240) - 3963843..3965951 (-) 2109 WP_002014829.1 polyphosphate kinase -
  EXW39_RS19840 (EXW39_20245) - 3966060..3967634 (-) 1575 WP_044442827.1 Ppx/GppA family phosphatase -
  EXW39_RS19845 (EXW39_20250) kre 3967776..3968234 (+) 459 WP_215590130.1 YkyB family protein Regulator
  EXW39_RS19850 (EXW39_20255) - 3968267..3968929 (-) 663 WP_002014826.1 YkyA family protein -
  EXW39_RS19855 (EXW39_20260) - 3969480..3970133 (-) 654 WP_215590131.1 diguanylate cyclase -
  EXW39_RS19860 (EXW39_20265) - 3970296..3970529 (+) 234 WP_002014824.1 phage holin -
  EXW39_RS19865 (EXW39_20270) - 3970561..3971061 (-) 501 WP_002033821.1 hypothetical protein -
  EXW39_RS19870 (EXW39_20275) - 3971614..3973155 (+) 1542 WP_002014821.1 MDR family MFS transporter -

Sequence

Protein


Download         Length: 152 a.a.        Molecular weight: 17723.43 Da        Isoelectric Point: 10.6793

>NTDB_id=346390 EXW39_RS19845 WP_215590130.1 3967776..3968234(+) (kre) [Bacillus mycoides strain JAS06/3]
MKPSQPQSPLHNQHSINRLAQSIFVVNRHAKAATNPKYLYWLKKAALERLITEKKAIKEGLHFSRNPRFSQQQSDVLIRL
GDYFFHIPPTKDDFRTLPHLGHLESSYRNPKTTLSLTIAKKTLQDYIGPEALKQEKKLSEPVPWYSRTYTKK

Nucleotide


Download         Length: 459 bp        

>NTDB_id=346390 EXW39_RS19845 WP_215590130.1 3967776..3968234(+) (kre) [Bacillus mycoides strain JAS06/3]
ATGAAACCTTCACAACCACAATCTCCATTGCATAATCAACATTCTATTAATAGACTAGCTCAATCTATTTTCGTTGTGAA
TCGTCATGCTAAAGCTGCAACTAACCCTAAGTACTTATATTGGTTAAAAAAGGCTGCTTTAGAACGCTTAATTACTGAAA
AAAAGGCTATCAAAGAAGGATTACATTTTTCTAGAAATCCACGTTTTAGTCAACAACAATCCGATGTTCTTATACGTTTA
GGTGATTATTTTTTCCATATCCCTCCTACGAAAGATGATTTTCGCACCCTACCGCATCTTGGTCACCTTGAATCCTCCTA
TCGAAATCCGAAAACAACCTTATCTTTAACAATAGCAAAAAAAACACTTCAAGATTATATTGGTCCTGAAGCATTAAAAC
AGGAAAAAAAATTAAGCGAACCAGTTCCATGGTATAGCCGTACCTATACAAAAAAATAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(16-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

63.793

76.316

0.487

Multiple sequence alignment