Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   EXW39_RS16385 Genome accession   NZ_CP036064
Coordinates   3258322..3258600 (-) Length   92 a.a.
NCBI ID   WP_215589946.1    Uniprot ID   -
Organism   Bacillus mycoides strain JAS06/3     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3253322..3263600
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW39_RS16345 (EXW39_16680) - 3253348..3253743 (-) 396 WP_215589941.1 (deoxy)nucleoside triphosphate pyrophosphohydrolase -
  EXW39_RS16350 (EXW39_16690) - 3254161..3255084 (-) 924 WP_350472267.1 HNH endonuclease -
  EXW39_RS16355 (EXW39_16695) - 3255222..3255596 (+) 375 Protein_3186 DUF5123 domain-containing protein -
  EXW39_RS16360 - 3255916..3256059 (-) 144 WP_002144257.1 hypothetical protein -
  EXW39_RS16365 (EXW39_16700) - 3256062..3256424 (-) 363 WP_215589942.1 hypothetical protein -
  EXW39_RS16370 (EXW39_16705) - 3256655..3257158 (+) 504 WP_215589943.1 hypothetical protein -
  EXW39_RS16375 (EXW39_16710) - 3257148..3257615 (+) 468 WP_215589944.1 hypothetical protein -
  EXW39_RS16380 (EXW39_16715) - 3257778..3258005 (+) 228 WP_215589945.1 hypothetical protein -
  EXW39_RS16385 (EXW39_16720) abrB 3258322..3258600 (-) 279 WP_215589946.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  EXW39_RS16395 - 3259184..3259848 (-) 665 Protein_3193 methyltransferase domain-containing protein -
  EXW39_RS16400 (EXW39_16735) - 3260323..3260850 (-) 528 WP_215589947.1 ester cyclase -
  EXW39_RS16405 (EXW39_16740) - 3261004..3261396 (-) 393 WP_003192952.1 nuclear transport factor 2 family protein -
  EXW39_RS16410 (EXW39_16745) - 3261401..3262222 (-) 822 WP_215589948.1 MBL fold metallo-hydrolase -
  EXW39_RS16415 (EXW39_16750) - 3262515..3263135 (-) 621 WP_215589949.1 DsbA family protein -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10053.69 Da        Isoelectric Point: 6.3325

>NTDB_id=346386 EXW39_RS16385 WP_215589946.1 3258322..3258600(-) (abrB) [Bacillus mycoides strain JAS06/3]
MKATGVTRKVDDLGRVVIPKELRNTLGIKEKSPLEIFVEGEDIILQKYQPGGVCALTGEVSNRNISLANGKITLSSEGAE
LLIKEVEQYLVK

Nucleotide


Download         Length: 279 bp        

>NTDB_id=346386 EXW39_RS16385 WP_215589946.1 3258322..3258600(-) (abrB) [Bacillus mycoides strain JAS06/3]
ATGAAAGCAACCGGAGTGACTAGAAAAGTAGATGATTTAGGGCGTGTGGTAATTCCAAAGGAACTTAGAAATACGCTAGG
TATTAAAGAAAAATCACCATTAGAGATCTTTGTAGAAGGTGAAGACATTATTTTACAGAAATATCAGCCCGGTGGTGTTT
GTGCATTAACAGGAGAGGTATCAAATCGTAACATATCATTAGCAAACGGTAAGATAACATTAAGTTCAGAAGGTGCCGAA
CTATTAATAAAAGAAGTAGAACAGTACCTTGTAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

61.111

97.826

0.598

Multiple sequence alignment