Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   EXW39_RS07985 Genome accession   NZ_CP036064
Coordinates   1565142..1565744 (-) Length   200 a.a.
NCBI ID   WP_002030800.1    Uniprot ID   A0A366GKC2
Organism   Bacillus mycoides strain JAS06/3     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1560142..1570744
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW39_RS07965 (EXW39_08095) dnaD 1560433..1561140 (+) 708 WP_000728546.1 DNA replication protein DnaD -
  EXW39_RS07970 (EXW39_08100) nth 1561156..1561803 (+) 648 WP_002030794.1 endonuclease III -
  EXW39_RS07975 (EXW39_08105) - 1561807..1562325 (+) 519 WP_215591008.1 YpoC family protein -
  EXW39_RS07980 (EXW39_08110) - 1562352..1565075 (-) 2724 WP_215591009.1 penicillin-binding protein 1A -
  EXW39_RS07985 (EXW39_08115) recU 1565142..1565744 (-) 603 WP_002030800.1 Holliday junction resolvase RecU Machinery gene
  EXW39_RS07990 (EXW39_08120) - 1565848..1566873 (+) 1026 WP_215591010.1 DUF2515 domain-containing protein -
  EXW39_RS30250 - 1567217..1567363 (-) 147 WP_306302660.1 phage portal protein -
  EXW39_RS07995 (EXW39_08125) - 1567482..1567724 (+) 243 WP_002030820.1 hypothetical protein -
  EXW39_RS08000 (EXW39_08130) - 1567740..1568084 (+) 345 WP_002011864.1 YppE family protein -
  EXW39_RS08005 (EXW39_08135) - 1568110..1568301 (-) 192 WP_002030817.1 YppF family protein -
  EXW39_RS08010 (EXW39_08140) - 1568479..1569093 (+) 615 WP_215591011.1 YppG family protein -
  EXW39_RS08015 (EXW39_08145) - 1569250..1569648 (+) 399 WP_215591012.1 spore coat protein -
  EXW39_RS08020 (EXW39_08150) - 1569705..1570259 (+) 555 WP_002030808.1 DUF1273 domain-containing protein -
  EXW39_RS08025 (EXW39_08155) gpsB 1570357..1570692 (+) 336 WP_000622426.1 cell division regulator GpsB -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 23347.59 Da        Isoelectric Point: 9.5601

>NTDB_id=346381 EXW39_RS07985 WP_002030800.1 1565142..1565744(-) (recU) [Bacillus mycoides strain JAS06/3]
MTIRYPNGKRYDQASQPHKTPIKKHTYSNRGMSLEEELNDTNQYYLTHNIACVHKKPTPLQIVKVDYPARSAAVVKEAYF
KQPSTTDYNGVYKGKYIDFEAKETKNKTSFPLQNFHLHQIEHMKQVVAHNGIAFVIIKFTLFDEFYLLDAKHIIAFWNRQ
NTGGRKSITKQEIEEHGSLLSCGYHPRIDYIRVLDTVYFS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=346381 EXW39_RS07985 WP_002030800.1 1565142..1565744(-) (recU) [Bacillus mycoides strain JAS06/3]
ATGACCATTCGTTACCCAAATGGAAAAAGGTACGATCAAGCTTCACAACCTCATAAAACACCAATAAAAAAACATACTTA
CAGTAATAGAGGTATGTCCCTTGAAGAGGAATTGAATGACACCAATCAATATTACTTAACCCATAATATTGCATGCGTAC
ATAAAAAACCTACACCTCTTCAAATTGTAAAAGTAGATTACCCCGCTCGAAGTGCTGCAGTGGTAAAAGAAGCGTATTTC
AAACAACCTTCTACAACAGATTACAACGGTGTATACAAAGGGAAATACATCGATTTTGAAGCGAAAGAAACTAAAAATAA
AACCAGTTTTCCACTTCAAAACTTCCACCTTCATCAAATTGAACATATGAAGCAAGTAGTCGCTCATAATGGAATTGCAT
TTGTTATTATTAAATTTACACTTTTTGATGAATTTTATTTATTAGATGCAAAACATATTATTGCATTTTGGAATCGTCAA
AATACTGGTGGACGTAAATCGATTACAAAACAAGAAATAGAAGAGCATGGGTCTTTATTATCATGCGGTTATCACCCTCG
AATTGATTATATCCGCGTACTAGACACGGTTTATTTTTCGTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(30-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A366GKC2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

62.5

100

0.625

Multiple sequence alignment