Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   EXW44_RS24585 Genome accession   NZ_CP036057
Coordinates   4764685..4766034 (-) Length   449 a.a.
NCBI ID   WP_215564503.1    Uniprot ID   -
Organism   Bacillus mycoides strain JAS06/1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4759685..4771034
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW44_RS24550 (EXW44_24860) - 4759806..4760501 (-) 696 WP_002129924.1 hypothetical protein -
  EXW44_RS24555 (EXW44_24865) - 4760488..4761276 (-) 789 WP_002129925.1 hypothetical protein -
  EXW44_RS24560 (EXW44_24870) - 4761308..4761892 (-) 585 WP_002068272.1 hypothetical protein -
  EXW44_RS24565 (EXW44_24875) - 4762011..4762505 (-) 495 WP_215563761.1 hypothetical protein -
  EXW44_RS24570 (EXW44_24880) hpf 4762794..4763336 (-) 543 WP_002089603.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  EXW44_RS24575 (EXW44_24885) cspC 4763657..4763854 (-) 198 WP_001990088.1 cold shock protein CspC -
  EXW44_RS24580 (EXW44_24890) - 4763981..4764685 (-) 705 WP_033731070.1 ComF family protein -
  EXW44_RS24585 (EXW44_24895) comFA 4764685..4766034 (-) 1350 WP_215564503.1 ATP-dependent helicase ComFA Machinery gene
  EXW44_RS24590 (EXW44_24900) - 4766165..4767508 (-) 1344 WP_002184658.1 NlpC/P60 family protein -
  EXW44_RS24595 (EXW44_24905) - 4767742..4768056 (-) 315 WP_002089608.1 helix-turn-helix domain-containing protein -
  EXW44_RS24600 (EXW44_24910) - 4768219..4769061 (-) 843 WP_002016143.1 DegV family protein -
  EXW44_RS24605 (EXW44_24915) - 4769300..4769935 (+) 636 WP_002034752.1 YigZ family protein -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 50864.22 Da        Isoelectric Point: 9.5337

>NTDB_id=346348 EXW44_RS24585 WP_215564503.1 4764685..4766034(-) (comFA) [Bacillus mycoides strain JAS06/1]
MLAGRQLLLEELSSDLQNKLDHLKKHREVVCVQGVIKKSSKYTCQRCGNIEQRLFASFLCKRCSEVCAYCRKCITMGRVS
ECAVLVRGIAEIQGESYLNPLQWEGVLSDGQELAAQSVVDAVRQKESFFIWAVCGAGKTEMLFRGIAEALQKGERVCIAT
PRTDVVLELAPRLQEVFPNINVAALYGGSLDREKDAALIVATTHQLLRYYRAFHVMIVDEIDAFPYHADKMLQYAVNEAM
KEKAARIYLTATPDEKWKRKLRSGKQKGVIISGRYHRHPLPVPIFRWCGNWKKGLIRKKIPRALLQWLNLYLSKRYPIFL
FVPHVRYVEEISQLLKSLNNQIDGVHAEDPARKEKVAAFRKGEIPLLVTTTILERGVTVKNLQVAVLGAEEEIFSESALV
QIAGRAGRSSDEPHGDVIYFHYGKTEAMVRAKKHIQSMNKNAKEQGLID

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=346348 EXW44_RS24585 WP_215564503.1 4764685..4766034(-) (comFA) [Bacillus mycoides strain JAS06/1]
ATGTTAGCTGGTAGACAGTTACTGTTAGAAGAACTCTCTTCAGATTTGCAGAATAAATTGGATCATTTGAAAAAGCACCG
AGAAGTCGTTTGTGTGCAAGGGGTAATTAAGAAGTCTTCAAAATATACGTGTCAGCGCTGCGGAAATATAGAGCAGCGAC
TATTTGCGTCATTTTTATGTAAGAGGTGCAGTGAAGTATGTGCGTATTGCCGTAAGTGTATAACGATGGGAAGGGTCAGT
GAATGTGCTGTACTTGTGCGCGGGATTGCTGAAATACAAGGAGAAAGTTATTTGAATCCGTTACAGTGGGAAGGCGTTTT
GTCTGACGGTCAGGAGTTAGCTGCGCAAAGTGTCGTTGACGCTGTTAGGCAGAAAGAATCATTTTTTATTTGGGCGGTGT
GCGGGGCTGGAAAAACAGAAATGTTGTTTCGCGGAATTGCAGAGGCACTACAAAAGGGAGAAAGAGTTTGTATTGCAACG
CCGAGAACGGACGTTGTACTTGAATTAGCACCAAGATTACAAGAAGTGTTTCCAAATATAAATGTAGCTGCTTTATACGG
AGGGAGTTTAGACCGAGAAAAAGATGCGGCGTTAATCGTTGCAACTACACATCAATTGTTACGTTATTATAGGGCGTTCC
ATGTCATGATTGTAGATGAGATAGATGCTTTTCCGTATCATGCAGATAAGATGTTGCAGTATGCAGTAAACGAAGCGATG
AAAGAGAAGGCAGCACGTATTTATTTAACTGCAACTCCAGATGAAAAGTGGAAGCGTAAGTTGCGAAGTGGTAAGCAAAA
AGGGGTTATTATTTCAGGGCGATACCATCGTCATCCATTGCCAGTTCCGATATTTCGGTGGTGCGGAAATTGGAAAAAGG
GTCTTATACGTAAAAAAATTCCTCGTGCTTTATTACAATGGTTAAATCTGTACTTATCGAAACGATACCCCATTTTTCTA
TTTGTTCCTCATGTGCGATATGTAGAAGAAATTAGCCAGTTATTAAAATCATTAAACAATCAAATTGACGGTGTGCATGC
AGAAGATCCGGCGAGAAAAGAGAAGGTAGCAGCTTTCAGAAAAGGAGAAATCCCTTTATTAGTTACAACGACGATTTTGG
AACGAGGAGTAACTGTGAAAAATTTACAAGTTGCAGTTTTAGGAGCTGAGGAAGAAATATTTTCAGAAAGTGCTCTCGTT
CAAATTGCAGGGCGTGCTGGCAGAAGCTCTGATGAACCGCATGGAGATGTTATCTATTTTCATTATGGAAAGACAGAGGC
GATGGTGCGTGCGAAAAAACATATTCAAAGTATGAATAAGAATGCTAAAGAACAAGGATTGATAGATTGA

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(313-409)

Type III restriction enzyme, res subunit (ResIII)

(107-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

50.113

98.218

0.492
  comFA Latilactobacillus sakei subsp. sakei 23K

40.955

88.641

0.363

Multiple sequence alignment