Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   EXW44_RS08405 Genome accession   NZ_CP036057
Coordinates   1659758..1660045 (+) Length   95 a.a.
NCBI ID   WP_002012401.1    Uniprot ID   A0A366G1Y4
Organism   Bacillus mycoides strain JAS06/1     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1654758..1665045
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW44_RS08385 (EXW44_08525) - 1655948..1656135 (+) 188 Protein_1637 DUF4083 domain-containing protein -
  EXW44_RS08390 (EXW44_08530) - 1656163..1656624 (+) 462 WP_002130989.1 NUDIX hydrolase -
  EXW44_RS08395 (EXW44_08535) nadE 1656669..1657487 (-) 819 WP_002012398.1 ammonia-dependent NAD(+) synthetase -
  EXW44_RS08400 (EXW44_08540) - 1657758..1659638 (+) 1881 WP_002012400.1 FtsX-like permease family protein -
  EXW44_RS08405 (EXW44_08545) abrB 1659758..1660045 (+) 288 WP_002012401.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  EXW44_RS08410 (EXW44_08550) - 1660380..1661330 (+) 951 WP_002012402.1 serine protease -
  EXW44_RS08415 (EXW44_08555) - 1661429..1661515 (+) 87 Protein_1643 IS6 family transposase -
  EXW44_RS08420 (EXW44_08560) - 1661545..1662648 (-) 1104 WP_078422293.1 ABC transporter ATP-binding protein -
  EXW44_RS08425 (EXW44_08565) - 1663052..1663915 (-) 864 WP_078422292.1 CdaR family transcriptional regulator -
  EXW44_RS08430 (EXW44_08570) - 1663985..1664845 (-) 861 WP_078422291.1 AraC family transcriptional regulator -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10647.42 Da        Isoelectric Point: 6.9795

>NTDB_id=346325 EXW44_RS08405 WP_002012401.1 1659758..1660045(+) (abrB) [Bacillus mycoides strain JAS06/1]
MKATGIIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVEEDKVILQKYQPYNACQITGDVSDQNISLANGNITVSIEGAK
HVIKEIEQFLNKSKI

Nucleotide


Download         Length: 288 bp        

>NTDB_id=346325 EXW44_RS08405 WP_002012401.1 1659758..1660045(+) (abrB) [Bacillus mycoides strain JAS06/1]
ATGAAAGCAACAGGAATTATTCGAAAAGTAGATGAATTGGGACGTATAGTTATTCCTAAAGAATTACGGGATGTATTAGG
AATACAAATCAAATCACCACTTGAAATTTTTGTAGAAGAAGACAAAGTCATTTTACAAAAATATCAACCATACAATGCTT
GTCAAATAACAGGTGATGTTTCAGATCAAAATATTTCATTAGCAAATGGAAACATTACTGTTAGTATAGAAGGCGCAAAA
CATGTAATAAAAGAAATTGAGCAGTTTTTGAACAAGAGTAAGATTTAG

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A366G1Y4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

56.383

98.947

0.558

Multiple sequence alignment