Detailed information    

insolico Bioinformatically predicted

Overview

Name   oppA   Type   Regulator
Locus tag   SSU_RS08390 Genome accession   NC_012925
Coordinates   1677135..1678925 (-) Length   596 a.a.
NCBI ID   WP_012775331.1    Uniprot ID   A0A060IG42
Organism   Streptococcus suis P1/7     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1672135..1683925
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSU_RS08370 (SSU1660) - 1672942..1673844 (-) 903 WP_002938141.1 ABC transporter permease -
  SSU_RS08375 (SSU1661) opp4B 1673858..1674814 (-) 957 WP_002938143.1 oligopeptide ABC transporter permease -
  SSU_RS08380 (SSU1662) - 1674816..1675757 (-) 942 WP_012027759.1 ATP-binding cassette domain-containing protein -
  SSU_RS08385 (SSU1663) - 1675760..1676758 (-) 999 WP_002942324.1 ABC transporter ATP-binding protein -
  SSU_RS08390 (SSU1664) oppA 1677135..1678925 (-) 1791 WP_012775331.1 oligopeptide ABC transporter substrate-binding protein Regulator
  SSU_RS08395 (SSU1665) pbp3 1679138..1680379 (+) 1242 WP_012775332.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  SSU_RS08400 (SSU1666) sufB 1680632..1682047 (-) 1416 WP_002938151.1 Fe-S cluster assembly protein SufB -
  SSU_RS08405 (SSU1668) sufU 1682397..1682837 (-) 441 WP_012027765.1 Fe-S cluster assembly sulfur transfer protein SufU -

Sequence

Protein


Download         Length: 596 a.a.        Molecular weight: 65671.66 Da        Isoelectric Point: 4.6364

>NTDB_id=34631 SSU_RS08390 WP_012775331.1 1677135..1678925(-) (oppA) [Streptococcus suis P1/7]
MKKTTKLFALAGVTLLSASVLAACGSKQSGAAKQELSFPAEVKQDGTAVADAQLKYAWVSPTTSSGLLIDELTENTTDST
FGGMVDISMFGYDGERKLDDSGLAKAEFDVKGKKITVSLTGKDYKWSDGESFTINDYIFTIKSMASKDYTGIRFDDKFLN
IEGMQEFVDGKASDISGIKKVDDYTVELTVKEMSPSMMYAGGDVPAYIQPEHIYKDIPVADWEKSEYSRTAKLVGMGPWK
IKEIVNGESITYVPNEYFFKGTKPKTSSLKIDIVSPDTIVSEMKAGNYDIAEMPVDQLDSYKDASNLNIVGQLESSYEYI
SFNFGKYDEAAGKNVMDENAKMNDVKLRQAIAYAIDTKTAGKSLYNGLYHPAKSLIISFFGDIHDSELEGYSYNPEKAKK
LLDEAGYKDVDGDGIREGKDGKAFKITFAARKRTEANEALVQQYIAWWKEVGLNVELYTGRTVEGKSFYNSVQANDAAID
MYAGGWSTGYDPNPSGLWGPIAAFNMSRFVSDENTKLLEAISSAESFDDKKNVENYKAWQKYAHEQAFAIPTFESEKITA
VNKRVKSYDTKYGSASGTGLAYEGIELTADKGVVAE

Nucleotide


Download         Length: 1791 bp        

>NTDB_id=34631 SSU_RS08390 WP_012775331.1 1677135..1678925(-) (oppA) [Streptococcus suis P1/7]
ATGAAAAAGACAACGAAACTTTTTGCACTTGCAGGTGTGACTCTCCTTTCAGCATCTGTTCTTGCAGCATGTGGTTCAAA
ACAATCAGGTGCAGCAAAACAGGAATTGTCATTCCCGGCTGAAGTAAAACAAGATGGAACAGCAGTCGCAGATGCTCAAT
TGAAATATGCTTGGGTATCTCCTACAACTTCATCAGGTCTTTTAATTGATGAGTTGACTGAGAATACTACTGATTCAACA
TTTGGTGGTATGGTTGATATTTCAATGTTCGGTTACGACGGAGAACGTAAGTTGGACGACTCAGGTCTTGCCAAGGCTGA
ATTTGATGTAAAAGGCAAGAAAATCACAGTCAGCTTGACTGGTAAGGATTACAAGTGGTCAGATGGTGAGTCATTCACAA
TCAACGACTACATCTTTACAATTAAGTCGATGGCAAGCAAAGACTATACAGGTATTCGTTTTGATGATAAATTCTTGAAT
ATTGAAGGTATGCAAGAATTTGTTGATGGAAAAGCATCAGACATCTCTGGTATTAAGAAAGTTGATGACTATACAGTAGA
ATTAACTGTAAAAGAAATGTCACCTTCAATGATGTATGCAGGTGGTGATGTCCCAGCCTATATCCAACCAGAACACATCT
ATAAAGACATCCCTGTTGCAGACTGGGAAAAGAGCGAATACTCACGTACTGCGAAGCTTGTTGGTATGGGGCCGTGGAAG
ATTAAGGAAATCGTCAATGGTGAGTCTATCACTTACGTACCAAACGAATACTTCTTCAAGGGTACGAAACCAAAAACAAG
CTCATTGAAGATTGACATCGTATCTCCTGATACTATTGTTTCTGAAATGAAAGCGGGGAATTATGATATCGCAGAAATGC
CGGTTGATCAGTTAGATTCATATAAGGATGCTTCTAACTTGAATATCGTTGGTCAGTTAGAGTCGTCTTATGAGTATATC
TCGTTTAATTTTGGTAAATATGACGAAGCAGCTGGTAAGAACGTTATGGATGAAAATGCCAAGATGAATGATGTGAAACT
TCGTCAAGCGATTGCCTATGCGATTGATACCAAGACAGCTGGTAAGTCATTATACAACGGTCTTTACCACCCTGCAAAAT
CATTGATTATCTCATTCTTCGGCGATATTCATGATTCAGAGTTGGAAGGCTATTCATACAATCCTGAAAAAGCGAAAAAG
CTTTTGGATGAAGCTGGCTACAAAGATGTAGATGGTGATGGTATCCGTGAAGGCAAAGATGGTAAGGCATTCAAGATTAC
CTTTGCGGCTCGTAAACGTACTGAAGCTAACGAAGCGCTTGTACAACAATACATTGCTTGGTGGAAAGAAGTTGGCTTGA
ATGTCGAACTTTACACAGGACGTACAGTTGAAGGTAAGTCGTTCTATAACTCAGTTCAGGCTAATGATGCTGCTATTGAT
ATGTATGCTGGTGGATGGTCAACAGGTTACGATCCAAACCCAAGTGGTCTATGGGGGCCTATCGCAGCCTTCAATATGTC
ACGTTTCGTGTCCGATGAAAACACCAAGTTATTGGAAGCTATCAGCTCAGCAGAGTCGTTTGATGATAAGAAAAACGTTG
AGAACTATAAGGCTTGGCAAAAATATGCTCACGAGCAAGCATTTGCTATTCCAACGTTTGAGTCAGAAAAAATTACTGCT
GTTAATAAACGTGTGAAAAGCTATGATACAAAATACGGCTCAGCTTCGGGTACAGGTCTTGCTTATGAGGGTATCGAATT
GACAGCTGATAAGGGTGTAGTGGCAGAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(103-499)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A060IG42

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  oppA Streptococcus suis isolate S10

100

100

1

Multiple sequence alignment