Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   EXW64_RS07745 Genome accession   NZ_CP036052
Coordinates   1480921..1481523 (-) Length   200 a.a.
NCBI ID   WP_000155587.1    Uniprot ID   -
Organism   Bacillus toyonensis strain JAS03/3     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1475921..1486523
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW64_RS07725 (EXW64_07860) dnaD 1476260..1476967 (+) 708 WP_000728536.1 DNA replication protein DnaD -
  EXW64_RS07730 (EXW64_07865) nth 1476983..1477630 (+) 648 WP_000933024.1 endonuclease III -
  EXW64_RS07735 (EXW64_07870) - 1477634..1478152 (+) 519 WP_000442696.1 YpoC family protein -
  EXW64_RS07740 (EXW64_07875) - 1478176..1480854 (-) 2679 WP_061530147.1 PBP1A family penicillin-binding protein -
  EXW64_RS07745 (EXW64_07880) recU 1480921..1481523 (-) 603 WP_000155587.1 Holliday junction resolvase RecU Machinery gene
  EXW64_RS07750 (EXW64_07885) - 1481627..1482652 (+) 1026 WP_002105458.1 DUF2515 domain-containing protein -
  EXW64_RS30630 - 1482817..1482996 (-) 180 WP_079519189.1 phage portal protein -
  EXW64_RS07755 (EXW64_07890) - 1483082..1483324 (+) 243 WP_001252045.1 hypothetical protein -
  EXW64_RS07760 (EXW64_07895) - 1483340..1483684 (+) 345 WP_000455491.1 YppE family protein -
  EXW64_RS07765 (EXW64_07900) - 1483710..1483901 (-) 192 WP_000242658.1 YppF family protein -
  EXW64_RS07770 (EXW64_07905) - 1484079..1484588 (+) 510 WP_000487696.1 YppG family protein -
  EXW64_RS07775 (EXW64_07910) - 1484746..1485189 (+) 444 WP_000546286.1 spore coat protein -
  EXW64_RS07780 (EXW64_07915) - 1485246..1485800 (+) 555 WP_000869384.1 DUF1273 domain-containing protein -
  EXW64_RS07785 (EXW64_07920) gpsB 1485898..1486233 (+) 336 WP_000622427.1 cell division regulator GpsB -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 23261.58 Da        Isoelectric Point: 9.6725

>NTDB_id=346281 EXW64_RS07745 WP_000155587.1 1480921..1481523(-) (recU) [Bacillus toyonensis strain JAS03/3]
MTIRYPNGKRYNQASLPPKTPIKKHTYSNRGMSLEEELNETNQYYLTHNIACVHKKPTPLQIVKVDYPARSAAVVKEAYF
KQPSTTDYNGVYKGKYIDFEAKETKNKTSFPLQNFHLHQIEHMKQVIAHNGVAFVIIKFTLFDEFYLLDAKHIIAFWNRQ
NNGGRKSITKEEIEAHGSLLSCGYHPRIDYIRVLDTVYFS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=346281 EXW64_RS07745 WP_000155587.1 1480921..1481523(-) (recU) [Bacillus toyonensis strain JAS03/3]
ATGACCATTCGTTACCCAAATGGAAAAAGGTACAATCAAGCTTCACTACCTCCTAAAACACCAATAAAAAAACATACTTA
TAGTAATAGAGGTATGTCCCTTGAAGAGGAATTGAATGAAACAAATCAATATTACTTAACCCATAATATTGCATGTGTAC
ATAAAAAACCTACACCTCTTCAAATTGTAAAAGTAGATTACCCCGCTCGAAGTGCTGCAGTGGTAAAAGAAGCGTATTTT
AAACAACCTTCTACAACGGATTACAACGGTGTATACAAAGGGAAATACATCGATTTTGAAGCGAAGGAAACAAAAAACAA
AACTAGTTTCCCACTTCAAAACTTCCACCTTCATCAAATTGAACATATGAAGCAAGTAATTGCTCATAATGGAGTTGCAT
TTGTTATTATTAAATTTACACTTTTTGATGAATTTTATTTACTCGATGCGAAACATATTATTGCATTTTGGAACCGTCAA
AATAATGGTGGGCGTAAGTCAATTACTAAAGAAGAAATAGAAGCGCATGGATCATTGTTATCATGCGGTTATCACCCTCG
GATTGATTATATCCGTGTACTAGACACGGTTTATTTTTCGTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(30-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

63

100

0.63

Multiple sequence alignment