Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   EXW28_RS21510 Genome accession   NZ_CP036046
Coordinates   4197094..4199430 (-) Length   778 a.a.
NCBI ID   WP_215584077.1    Uniprot ID   -
Organism   Bacillus mycoides strain BPN601     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4192094..4204430
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW28_RS21485 (EXW28_21995) - 4194754..4195098 (+) 345 WP_215584075.1 PH domain-containing protein -
  EXW28_RS21490 (EXW28_22000) - 4195137..4196204 (-) 1068 WP_002129216.1 AI-2E family transporter -
  EXW28_RS21495 (EXW28_22005) - 4196382..4196594 (+) 213 WP_002015285.1 hypothetical protein -
  EXW28_RS21500 (EXW28_22010) - 4196631..4196759 (-) 129 WP_002015286.1 YrzQ family protein -
  EXW28_RS21505 (EXW28_22015) - 4196778..4196966 (-) 189 WP_002015288.1 hypothetical protein -
  EXW28_RS21510 (EXW28_22020) recD2 4197094..4199430 (-) 2337 WP_215584077.1 ATP-dependent RecD-like DNA helicase Machinery gene
  EXW28_RS21515 (EXW28_22025) - 4199538..4200197 (-) 660 WP_215584079.1 tetratricopeptide repeat protein -
  EXW28_RS21520 (EXW28_22030) mnmA 4200308..4201423 (-) 1116 WP_002088752.1 tRNA 2-thiouridine(34) synthase MnmA -
  EXW28_RS21525 (EXW28_22035) - 4201440..4202585 (-) 1146 WP_061689583.1 cysteine desulfurase family protein -
  EXW28_RS21530 (EXW28_22040) - 4202621..4203037 (-) 417 WP_000704117.1 Rrf2 family transcriptional regulator -

Sequence

Protein


Download         Length: 778 a.a.        Molecular weight: 87281.93 Da        Isoelectric Point: 5.2072

>NTDB_id=346246 EXW28_RS21510 WP_215584077.1 4197094..4199430(-) (recD2) [Bacillus mycoides strain BPN601]
MGNQNAMDLFEEEKKFIKAQVLHTIFHNEENLYSVVSMKIIETNETYDEKKVMINGHFPRMHEDEVFTLTGHFKDHPKYG
KQYLVETFKKELPQTKAGMVQYLASDLFKGIGKRTAEKIVDHLGEHAISKIMDDPDALNGVVNKQKAQEIYETIIEHQGL
EKVMSFLNGYGFGTKLSIKIYQQYKEMTLEVIRNNPYKLIEEVDGIGFGRADDIGRAIGITGNHDDRVRAGCFYTLENIS
LQLGHVYMEKGQLVRETMSLLNNQEGRVTEEDIVGCVEMMQSEGKVIIEEERVYLASLFYSEKGVVKSIRRLMNQEETPA
FPEAEVLKTLGEIEEQLKVQYAPLQQEAVQTALHKPMMLLTGGPGTGKTTVIKGIVEMYASLHGVSLNPNEYSDDNPFPI
LLTAPTGRAAKRMSESTGLPACTIHRLLGWTPEGSFQRNETDPVQGKLLIIDEFSMVDIWLANQLFKSLPTNIQVIVVGD
EDQLPSVGPGQVLKDLLNAGAIPTVKLTEIYRQAEGSSVIQLAHAIKDGTLPPDLAQNKKDRSFISCAGAQIVEVVKKVC
ENAKTKGFSARDVQVLAPMYRGPAGINVLNEALQEVFNPKKEKSKEIAYGDVVYRRGDKVLQLVNQPESQVFNGDIGEIV
SVFYAKENVEQQDMIIVSFDGIEVTYTKPDLNQITHAYCCSIHKSQGSEFPIVIMPIVKSYYRMLRRNLIYTGITRSKKF
LIICGEEAAFQSGVNRLDDAMRQTTLAGRLQESQGEVQMVTVNGEEMDVENISPYDFM

Nucleotide


Download         Length: 2337 bp        

>NTDB_id=346246 EXW28_RS21510 WP_215584077.1 4197094..4199430(-) (recD2) [Bacillus mycoides strain BPN601]
ATGGGAAATCAAAATGCAATGGATTTGTTTGAGGAAGAGAAAAAATTTATAAAAGCGCAAGTTCTTCATACCATTTTCCA
CAACGAAGAAAACCTCTATTCCGTTGTCAGTATGAAAATCATTGAAACGAATGAAACATATGACGAAAAAAAAGTGATGA
TAAACGGTCACTTTCCCCGTATGCACGAAGATGAAGTGTTTACATTAACAGGTCACTTTAAAGACCACCCAAAGTATGGG
AAACAATATTTAGTTGAAACGTTTAAGAAAGAATTGCCGCAAACGAAAGCTGGTATGGTCCAATATTTAGCGAGCGATTT
ATTTAAAGGGATTGGAAAGCGTACAGCCGAAAAAATCGTTGATCATCTCGGTGAGCATGCGATTTCTAAAATTATGGATG
ACCCTGATGCGTTAAATGGTGTTGTAAACAAGCAAAAAGCACAGGAAATATATGAGACGATTATTGAGCATCAAGGGCTA
GAGAAAGTGATGAGCTTTTTAAATGGTTACGGTTTTGGAACGAAGCTTTCTATTAAAATTTATCAGCAATATAAAGAGAT
GACATTAGAAGTGATTCGTAATAATCCGTATAAACTTATTGAAGAAGTGGACGGAATTGGATTTGGAAGAGCAGATGATA
TAGGGCGTGCAATCGGAATAACGGGCAATCACGACGACCGTGTACGTGCAGGGTGTTTTTATACGTTAGAGAATATTTCA
TTACAACTCGGTCACGTGTATATGGAAAAAGGTCAGCTTGTAAGAGAAACGATGTCACTTTTAAATAATCAAGAAGGCAG
AGTGACTGAGGAAGATATTGTAGGCTGCGTTGAAATGATGCAAAGCGAAGGGAAAGTCATTATAGAAGAAGAGCGAGTGT
ATTTAGCTTCTTTATTCTATTCTGAGAAAGGCGTTGTAAAGTCAATTCGTCGTCTTATGAATCAAGAAGAAACCCCTGCA
TTCCCTGAAGCAGAAGTGTTAAAAACATTAGGAGAAATTGAAGAACAGCTAAAGGTACAGTATGCGCCGCTTCAGCAAGA
AGCAGTTCAAACTGCACTTCATAAGCCGATGATGTTATTAACAGGTGGACCAGGGACGGGGAAAACAACAGTTATTAAAG
GAATTGTTGAAATGTATGCGTCACTTCACGGAGTATCATTAAATCCGAATGAATATAGTGATGATAATCCATTTCCAATA
TTATTAACGGCCCCAACTGGAAGAGCGGCGAAGCGCATGAGTGAATCGACAGGACTTCCAGCTTGCACAATTCATCGTCT
GCTTGGATGGACGCCAGAAGGATCTTTTCAGCGCAATGAAACAGACCCTGTACAAGGGAAGCTCCTTATTATTGATGAGT
TTTCGATGGTAGATATTTGGCTTGCAAATCAGCTATTCAAGTCACTTCCGACGAACATCCAAGTAATCGTTGTAGGTGAT
GAAGACCAATTACCATCGGTAGGACCTGGACAAGTGTTGAAAGATTTATTAAATGCAGGTGCCATTCCAACGGTAAAACT
CACAGAAATTTATCGTCAGGCAGAAGGTTCGTCTGTTATTCAGCTTGCCCATGCGATAAAAGACGGGACGCTCCCGCCAG
ATTTAGCACAAAATAAAAAAGATCGTTCATTTATCAGCTGTGCAGGTGCTCAAATTGTTGAGGTTGTTAAAAAGGTTTGT
GAAAATGCTAAGACAAAAGGCTTTAGTGCAAGAGATGTACAAGTATTGGCACCAATGTACCGCGGACCAGCAGGTATTAA
TGTGTTAAATGAAGCTCTTCAAGAAGTGTTTAATCCGAAAAAAGAAAAGAGTAAAGAAATTGCCTACGGTGACGTTGTAT
ACCGGAGAGGTGATAAAGTACTTCAATTAGTCAATCAGCCGGAAAGCCAAGTGTTTAATGGTGATATTGGAGAAATTGTT
TCAGTATTTTATGCGAAAGAAAATGTCGAGCAACAAGATATGATTATCGTTTCATTTGATGGAATTGAAGTAACATATAC
AAAGCCGGATTTAAATCAAATTACGCATGCCTATTGCTGCTCGATTCATAAATCGCAAGGTAGTGAATTCCCAATAGTTA
TTATGCCAATTGTAAAGAGCTACTACCGTATGTTACGTCGTAATTTAATTTACACGGGTATTACAAGGAGTAAGAAATTC
CTTATTATTTGCGGGGAGGAAGCAGCGTTTCAATCCGGTGTAAATCGCCTTGATGATGCAATGCGTCAAACGACTTTAGC
TGGCCGATTGCAAGAATCACAAGGAGAAGTGCAGATGGTGACGGTTAATGGTGAAGAAATGGACGTGGAAAACATTTCAC
CGTATGATTTCATGTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(156-247)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(676-724)

AAA domain (AAA_30)

(341-548)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(589-659)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

57.216

100

0.576

Multiple sequence alignment