Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   EXW28_RS07795 Genome accession   NZ_CP036046
Coordinates   1536351..1536953 (-) Length   200 a.a.
NCBI ID   WP_002030800.1    Uniprot ID   A0A366GKC2
Organism   Bacillus mycoides strain BPN601     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1531351..1541953
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW28_RS07775 (EXW28_07930) dnaD 1531652..1532359 (+) 708 WP_215584755.1 DNA replication protein DnaD -
  EXW28_RS07780 (EXW28_07935) nth 1532375..1533022 (+) 648 WP_000933020.1 endonuclease III -
  EXW28_RS07785 (EXW28_07940) - 1533026..1533544 (+) 519 WP_002189007.1 YpoC family protein -
  EXW28_RS07790 (EXW28_07945) - 1533570..1536284 (-) 2715 WP_215584757.1 penicillin-binding protein 1A -
  EXW28_RS07795 (EXW28_07950) recU 1536351..1536953 (-) 603 WP_002030800.1 Holliday junction resolvase RecU Machinery gene
  EXW28_RS07800 (EXW28_07955) - 1537057..1538082 (+) 1026 WP_215552652.1 DUF2515 domain-containing protein -
  EXW28_RS29690 - 1538426..1538572 (-) 147 WP_306302660.1 phage portal protein -
  EXW28_RS07805 (EXW28_07960) - 1538691..1538933 (+) 243 WP_002011865.1 hypothetical protein -
  EXW28_RS07810 (EXW28_07965) - 1538949..1539293 (+) 345 WP_002011864.1 YppE family protein -
  EXW28_RS07815 (EXW28_07970) - 1539319..1539510 (-) 192 WP_012260642.1 YppF family protein -
  EXW28_RS07820 (EXW28_07975) - 1539687..1540373 (+) 687 WP_215584759.1 YppG family protein -
  EXW28_RS07825 (EXW28_07980) - 1540530..1540979 (+) 450 WP_215552650.1 CotD family spore coat protein -
  EXW28_RS07830 (EXW28_07985) - 1541036..1541590 (+) 555 WP_215552649.1 DUF1273 domain-containing protein -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 23347.59 Da        Isoelectric Point: 9.5601

>NTDB_id=346230 EXW28_RS07795 WP_002030800.1 1536351..1536953(-) (recU) [Bacillus mycoides strain BPN601]
MTIRYPNGKRYDQASQPHKTPIKKHTYSNRGMSLEEELNDTNQYYLTHNIACVHKKPTPLQIVKVDYPARSAAVVKEAYF
KQPSTTDYNGVYKGKYIDFEAKETKNKTSFPLQNFHLHQIEHMKQVVAHNGIAFVIIKFTLFDEFYLLDAKHIIAFWNRQ
NTGGRKSITKQEIEEHGSLLSCGYHPRIDYIRVLDTVYFS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=346230 EXW28_RS07795 WP_002030800.1 1536351..1536953(-) (recU) [Bacillus mycoides strain BPN601]
ATGACCATTCGTTACCCAAATGGAAAAAGGTACGATCAAGCTTCACAACCTCATAAAACACCAATAAAAAAACATACTTA
CAGTAATAGAGGTATGTCCCTTGAAGAGGAATTGAATGACACCAATCAATATTACTTAACCCATAATATTGCATGCGTAC
ATAAAAAACCTACACCTCTTCAAATTGTAAAAGTAGATTACCCCGCTCGAAGTGCTGCAGTGGTAAAAGAAGCGTATTTC
AAACAACCTTCTACAACAGATTACAACGGTGTATACAAAGGGAAATACATCGATTTTGAAGCGAAAGAAACTAAAAATAA
AACCAGTTTTCCACTTCAAAACTTCCACCTTCATCAAATTGAACATATGAAGCAAGTAGTCGCTCATAATGGAATTGCAT
TTGTTATTATTAAATTTACACTTTTTGATGAATTTTATTTATTAGATGCAAAACATATTATTGCATTTTGGAATCGTCAA
AATACTGGTGGACGTAAATCGATTACAAAACAAGAAATAGAAGAGCATGGGTCTTTATTATCATGCGGTTATCACCCTCG
AATTGATTATATCCGCGTACTAGACACGGTTTATTTTTCGTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(30-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A366GKC2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

62.5

100

0.625

Multiple sequence alignment