Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   EXW28_RS06380 Genome accession   NZ_CP036046
Coordinates   1269852..1270175 (-) Length   107 a.a.
NCBI ID   WP_002030429.1    Uniprot ID   A0A084J505
Organism   Bacillus mycoides strain BPN601     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1264852..1275175
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW28_RS06355 (EXW28_06525) - 1264966..1266252 (+) 1287 WP_215552728.1 D-alanyl-D-alanine carboxypeptidase family protein -
  EXW28_RS06360 (EXW28_06530) sipW 1266450..1267019 (+) 570 WP_002064334.1 signal peptidase I SipW -
  EXW28_RS06365 (EXW28_06535) - 1267082..1267669 (+) 588 WP_063217402.1 CalY family protein -
  EXW28_RS06370 (EXW28_06540) - 1267834..1268739 (+) 906 WP_215552727.1 DUF4047 domain-containing protein -
  EXW28_RS06375 (EXW28_06545) calY 1269176..1269769 (+) 594 WP_215552726.1 biofilm matrix protein CalY -
  EXW28_RS06380 (EXW28_06550) sinR 1269852..1270175 (-) 324 WP_002030429.1 helix-turn-helix domain-containing protein Regulator
  EXW28_RS06385 (EXW28_06555) - 1270255..1270389 (-) 135 WP_000276222.1 anti-repressor SinI family protein -
  EXW28_RS06390 (EXW28_06560) inhA1 1270734..1273121 (+) 2388 WP_215552725.1 M6 family metalloprotease immune inhibitor InhA1 -
  EXW28_RS06395 (EXW28_06565) - 1273292..1274659 (+) 1368 WP_215552724.1 aldehyde dehydrogenase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12274.04 Da        Isoelectric Point: 7.2050

>NTDB_id=346228 EXW28_RS06380 WP_002030429.1 1269852..1270175(-) (sinR) [Bacillus mycoides strain BPN601]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTTEGHLDSEWTQLV
KDAMSSGVSKEQFREFLEFTQWKKNQQ

Nucleotide


Download         Length: 324 bp        

>NTDB_id=346228 EXW28_RS06380 WP_002030429.1 1269852..1270175(-) (sinR) [Bacillus mycoides strain BPN601]
ATGATAGGAGAACGTATAAAACGCCTTCGTTTACAAAAAGGTATTTCATTAACAGAACTCGCCGAAAAAGCTGGTGTAGC
TAAATCTTACATTAGTTCTATAGAACGGAATTTACAAAAAAACCCTTCTATTCAGTTTCTTGAAAAAATTGCAGCTGTTC
TACAAATTCCAGTTGATACTTTACTTCACGATGAAACAACAACGGAGGGTCACCTAGACTCCGAATGGACACAGCTCGTT
AAAGATGCGATGAGCTCTGGTGTCTCAAAAGAACAGTTTCGTGAATTTCTCGAATTTACACAATGGAAGAAAAATCAACA
ATAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-60)

Anti-repressor SinI (SinI)

(72-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A084J505

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

67.89

100

0.692

Multiple sequence alignment