Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   LP12_RS11540 Genome accession   NC_016811
Coordinates   2592044..2593399 (-) Length   451 a.a.
NCBI ID   WP_025862411.1    Uniprot ID   -
Organism   Legionella pneumophila subsp. pneumophila ATCC 43290     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2587044..2598399
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LP12_RS11525 (lp12_2315) pilU 2587784..2588905 (-) 1122 WP_010948029.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  LP12_RS11530 (lp12_2316) - 2588995..2590923 (-) 1929 WP_010948030.1 FAD-binding oxidoreductase -
  LP12_RS11535 (lp12_2317) - 2591211..2592047 (-) 837 WP_010948031.1 phytanoyl-CoA dioxygenase family protein -
  LP12_RS11540 (lp12_2318) radA/sms 2592044..2593399 (-) 1356 WP_025862411.1 DNA repair protein RadA Machinery gene
  LP12_RS11545 (lp12_2319) - 2593631..2594524 (+) 894 WP_010948033.1 lpg2327 family Dot/Icm T4SS effector -
  LP12_RS11550 (lp12_2320) lem22 2594788..2595171 (+) 384 WP_010948034.1 Dot/Icm T4SS effector Lem22 -
  LP12_RS11555 (lp12_2321) - 2595365..2595595 (+) 231 WP_010948035.1 exodeoxyribonuclease VII small subunit -
  LP12_RS11560 (lp12_2322) - 2595576..2596472 (+) 897 WP_015444138.1 polyprenyl synthetase family protein -
  LP12_RS11565 (lp12_2323) bioC 2596516..2597370 (-) 855 WP_015444137.1 malonyl-ACP O-methyltransferase BioC -
  LP12_RS11570 (lp12_2324) comFC 2597414..2598118 (+) 705 WP_349254537.1 ComF family protein Machinery gene

Sequence

Protein


Download         Length: 451 a.a.        Molecular weight: 49047.77 Da        Isoelectric Point: 7.7495

>NTDB_id=34621 LP12_RS11540 WP_025862411.1 2592044..2593399(-) (radA/sms) [Legionella pneumophila subsp. pneumophila ATCC 43290]
MMKVKTQFVCNQCAAIFKQWAGQCTQCGAWNSIVEEGIMPENKTLRSGQWANQRSVITAVEDVVMDKIVRMDCGISELNR
VLGGGLVYGSVVLIGGDPGIGKSTLLLQTLANLSMQETVLYVTGEESLQQVAMRAQRLGLPLAGLRLLAETQVESIIAQA
QKEKPRIIVVDSVQTIFTEAISSAPGGVSQVRESAAQLVRYAKMTNTAIFLVGHVTKEGTLAGPRVLEHMVDSVLYFEGQ
NDSRFRVIRAIKNRFGAVNELGVFAMTDKGLKEVANPSAIFLSRQPEPTPGSAVMVTWEGSRPMLVEVQALVDEAHGQQA
KRVTAGLEHNRLAILLAVLHRHGGIATYDQDVFINVVGGVKVTETASDLALLAAVISSLRNRIFDSETIIFGEVGLAGEI
RPVQSGQERIKEAIKHGFKRAIVPFANAPKQQIDSMTVEPVKHLRDVLEKM

Nucleotide


Download         Length: 1356 bp        

>NTDB_id=34621 LP12_RS11540 WP_025862411.1 2592044..2593399(-) (radA/sms) [Legionella pneumophila subsp. pneumophila ATCC 43290]
ATTATGAAAGTGAAAACCCAGTTTGTTTGTAATCAATGCGCGGCCATTTTTAAACAATGGGCAGGACAATGTACTCAATG
TGGCGCCTGGAATTCCATTGTTGAAGAAGGGATTATGCCTGAAAACAAGACTTTACGAAGTGGGCAATGGGCTAATCAGC
GCTCTGTCATCACTGCTGTTGAAGACGTTGTAATGGACAAAATAGTACGTATGGATTGTGGTATATCCGAGCTCAACCGG
GTTTTGGGAGGGGGGCTGGTTTATGGCTCGGTTGTTTTGATTGGAGGGGATCCGGGGATCGGTAAATCCACCTTACTGTT
GCAAACGCTGGCTAATTTATCTATGCAAGAAACAGTATTGTATGTGACGGGGGAAGAGTCATTACAACAAGTTGCCATGC
GTGCCCAAAGATTGGGACTACCTTTGGCCGGACTGCGGCTATTGGCAGAAACTCAGGTTGAATCCATCATTGCTCAAGCC
CAAAAGGAAAAGCCGCGAATTATTGTCGTCGATTCAGTACAAACGATATTCACTGAAGCCATAAGTTCTGCTCCGGGAGG
AGTTAGTCAAGTCAGGGAATCGGCAGCACAATTGGTGCGTTATGCCAAGATGACCAATACGGCCATCTTCCTGGTAGGGC
ATGTCACCAAGGAAGGAACATTAGCCGGGCCTCGGGTGTTAGAACATATGGTTGATAGTGTTCTCTATTTTGAGGGGCAA
AATGATAGCCGCTTCAGAGTCATTCGCGCCATTAAAAATCGTTTTGGCGCTGTCAATGAATTAGGTGTATTTGCGATGAC
TGACAAAGGCCTGAAGGAGGTAGCCAACCCCTCAGCTATTTTTTTATCTCGCCAGCCCGAACCTACGCCTGGCAGTGCAG
TGATGGTGACTTGGGAAGGATCAAGACCCATGTTGGTAGAAGTACAAGCATTGGTTGATGAGGCCCACGGTCAGCAAGCG
AAACGCGTTACTGCGGGTCTTGAGCATAATCGCCTGGCTATCTTGTTAGCTGTTTTACACCGTCATGGAGGTATCGCTAC
TTACGATCAGGATGTTTTTATCAATGTAGTCGGGGGAGTGAAAGTGACTGAAACAGCGAGTGATTTGGCTTTGTTGGCTG
CAGTGATTTCAAGTTTACGTAATCGTATATTTGATAGTGAAACCATCATATTCGGTGAAGTGGGATTAGCGGGGGAAATC
AGACCAGTGCAAAGTGGTCAAGAACGCATTAAGGAGGCTATAAAACATGGATTCAAGCGTGCTATAGTCCCTTTTGCCAA
TGCTCCCAAACAGCAAATCGATTCCATGACGGTAGAGCCAGTTAAACATTTGCGAGATGTATTGGAGAAAATGTGA

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(329-427)

AAA domain (AAA_25)

(74-219)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

48.268

96.009

0.463
  radA Streptococcus pneumoniae Rx1

48.113

94.013

0.452
  radA Streptococcus pneumoniae D39

48.113

94.013

0.452
  radA Streptococcus pneumoniae R6

48.113

94.013

0.452
  radA Streptococcus pneumoniae TIGR4

48.113

94.013

0.452
  radA Streptococcus mitis SK321

48.113

94.013

0.452
  radA Streptococcus mitis NCTC 12261

47.877

94.013

0.45

Multiple sequence alignment