Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   EXW51_RS25820 Genome accession   NZ_CP036043
Coordinates   4932598..4933947 (-) Length   449 a.a.
NCBI ID   WP_215574151.1    Uniprot ID   -
Organism   Bacillus mycoides strain BPN58/4     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4927598..4938947
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW51_RS25795 (EXW51_26260) - 4929149..4930077 (-) 929 Protein_4984 helix-turn-helix transcriptional regulator -
  EXW51_RS25800 (EXW51_26265) - 4930160..4930603 (+) 444 WP_215574149.1 VOC family protein -
  EXW51_RS25805 (EXW51_26270) hpf 4930706..4931248 (-) 543 WP_002034758.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  EXW51_RS25810 (EXW51_26275) cspC 4931570..4931767 (-) 198 WP_001990088.1 cold shock protein CspC -
  EXW51_RS25815 (EXW51_26280) - 4931894..4932598 (-) 705 WP_215574150.1 ComF family protein -
  EXW51_RS25820 (EXW51_26285) comFA 4932598..4933947 (-) 1350 WP_215574151.1 ATP-dependent helicase ComFA Machinery gene
  EXW51_RS25825 (EXW51_26290) - 4934078..4935521 (-) 1444 Protein_4990 NlpC/P60 family protein -
  EXW51_RS25830 (EXW51_26295) - 4935655..4935969 (-) 315 WP_002089608.1 helix-turn-helix domain-containing protein -
  EXW51_RS25835 (EXW51_26300) - 4936132..4936974 (-) 843 WP_215574153.1 DegV family protein -
  EXW51_RS25840 (EXW51_26305) - 4937367..4938002 (+) 636 WP_215574154.1 YigZ family protein -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 50839.18 Da        Isoelectric Point: 9.3683

>NTDB_id=346203 EXW51_RS25820 WP_215574151.1 4932598..4933947(-) (comFA) [Bacillus mycoides strain BPN58/4]
MLAGRQLLLEELSSDLQDKLDHLKRNRDVVCVQGVIKKSSKYMCQRCGNIEQRLFASLLCKRCNEVCTYCRKCITMGRVS
ECTVLVRGIAEISGESYLNPLQWEGILSDGQELAAQSVVDAVKQKESFFIWAVCGAGKTEMLFHGIAEALQKGERVCIAT
PRTDVVLELAPRLQEVFPNINVAALYGGSLDREKDAALIVATTHQLLRYHRAFHVMIVDEIDAFPYHADKMLQYAVNEAM
KEKAARIYLTATPDEKWKRKLRSGKQKGVIISGRYHRHPLPVPIFRWCGNWKKGVIRKKIPRALLQWLNLYLSKRYPIFL
FVPHVRYVEEISQLLKSLNNQIDGVHAEDPARKEKVAAFRKGEIPLLVTTTILERGVTIKNLQVAVLGAEEEIFSESALV
QIAGRAGRSSDEPHGDVIYFHYGKTEAMVRAKKHIQSMNKNAKEQGLID

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=346203 EXW51_RS25820 WP_215574151.1 4932598..4933947(-) (comFA) [Bacillus mycoides strain BPN58/4]
ATGTTAGCTGGTAGACAGTTACTGTTAGAAGAACTCTCTTCAGATTTGCAGGATAAATTGGATCATCTGAAAAGGAATCG
AGACGTCGTTTGTGTACAAGGGGTAATTAAGAAGTCTTCAAAATATATGTGTCAGCGCTGCGGAAATATAGAGCAGCGAC
TATTTGCATCATTGCTATGTAAAAGGTGCAATGAAGTATGTACGTATTGCCGGAAATGTATAACGATGGGCAGGGTAAGT
GAATGTACTGTACTTGTACGCGGGATTGCTGAAATAAGCGGAGAAAGTTATTTGAATCCGTTACAGTGGGAAGGCATTTT
GTCTGACGGTCAGGAGTTAGCTGCGCAAAGTGTCGTTGACGCTGTTAAGCAGAAAGAATCATTTTTTATTTGGGCGGTGT
GCGGGGCTGGAAAAACAGAAATGTTGTTTCACGGAATTGCAGAGGCACTACAAAAGGGAGAAAGAGTTTGTATTGCAACG
CCGAGAACGGACGTTGTACTTGAATTAGCACCAAGATTACAAGAAGTGTTTCCAAATATAAATGTAGCTGCTTTATACGG
AGGGAGTTTAGACCGAGAAAAAGATGCGGCGTTAATTGTTGCAACTACACATCAATTGTTACGTTATCATAGGGCGTTCC
ATGTCATGATTGTAGATGAGATAGATGCTTTTCCGTATCATGCAGATAAGATGTTGCAGTATGCAGTAAACGAAGCGATG
AAAGAGAAGGCAGCACGTATTTATTTAACTGCAACTCCAGATGAAAAGTGGAAGCGTAAGTTGCGAAGTGGTAAGCAAAA
AGGGGTTATTATTTCAGGGCGATACCATCGTCATCCATTGCCAGTTCCGATATTTCGGTGGTGCGGAAATTGGAAAAAGG
GTGTTATACGTAAAAAAATTCCTCGTGCTTTATTACAATGGTTAAATCTGTACTTATCGAAACGATACCCCATTTTTCTA
TTTGTTCCTCATGTGCGATATGTAGAAGAAATTAGCCAGTTATTAAAATCATTAAACAATCAAATTGACGGTGTGCATGC
AGAAGATCCGGCGAGAAAAGAGAAGGTAGCAGCTTTCAGAAAAGGAGAAATCCCTTTATTAGTTACAACGACGATTTTGG
AACGAGGAGTAACTATTAAAAATTTACAAGTTGCAGTTTTAGGAGCTGAGGAAGAAATATTTTCAGAAAGTGCTCTCGTT
CAAATTGCAGGGCGTGCTGGCAGAAGCTCTGATGAACCGCATGGAGATGTTATCTATTTTCATTATGGAAAGACAGAGGC
GATGGTGCGTGCGAAAAAACATATTCAAAGTATGAATAAGAATGCTAAAGAACAAGGATTGATAGATTGA

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(313-409)

Type III restriction enzyme, res subunit (ResIII)

(107-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

50.113

98.218

0.492
  comFA Latilactobacillus sakei subsp. sakei 23K

40.704

88.641

0.361

Multiple sequence alignment