Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   EXW51_RS19950 Genome accession   NZ_CP036043
Coordinates   3854680..3855114 (-) Length   144 a.a.
NCBI ID   WP_002014817.1    Uniprot ID   -
Organism   Bacillus mycoides strain BPN58/4     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3849680..3860114
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW51_RS19935 (EXW51_20325) - 3850825..3851382 (+) 558 WP_215573794.1 PadR family transcriptional regulator -
  EXW51_RS19940 (EXW51_20330) metE 3851923..3854211 (+) 2289 WP_215573795.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  EXW51_RS19945 (EXW51_20335) comJ 3854251..3854640 (-) 390 WP_002145973.1 competence protein ComJ -
  EXW51_RS19950 (EXW51_20340) nucA/comI 3854680..3855114 (-) 435 WP_002014817.1 DNA-entry nuclease Machinery gene
  EXW51_RS19955 (EXW51_20345) - 3855351..3856094 (+) 744 WP_215573796.1 DUF3967 domain-containing protein -
  EXW51_RS19960 (EXW51_20350) - 3856154..3857428 (-) 1275 WP_002014814.1 HAMP domain-containing sensor histidine kinase -
  EXW51_RS19965 (EXW51_20355) - 3857738..3857938 (+) 201 WP_002111542.1 hypothetical protein -
  EXW51_RS19970 (EXW51_20360) - 3858159..3859322 (+) 1164 WP_215573797.1 aminotransferase A -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16194.59 Da        Isoelectric Point: 8.4331

>NTDB_id=346189 EXW51_RS19950 WP_002014817.1 3854680..3855114(-) (nucA/comI) [Bacillus mycoides strain BPN58/4]
MKQFKGIIISIIAILSLLVAVYEVLVPEETSTKKTTTYDQILEFPKERYPETGKHITDAIKEGHSEMCTIDRNGAADRRK
LSLAPYPTKKGYDRDEWPMAMCKEGGKGAHIEYISPADNRGAGSWVGNKLDKYPDGTRVKFEVK

Nucleotide


Download         Length: 435 bp        

>NTDB_id=346189 EXW51_RS19950 WP_002014817.1 3854680..3855114(-) (nucA/comI) [Bacillus mycoides strain BPN58/4]
ATGAAGCAATTTAAAGGTATTATCATTTCAATTATTGCAATTCTTTCTCTTTTGGTAGCGGTATATGAAGTACTTGTGCC
AGAGGAGACAAGTACTAAAAAAACAACTACGTATGATCAAATTCTAGAGTTCCCGAAAGAACGATATCCAGAGACCGGGA
AACATATAACGGATGCTATAAAAGAAGGGCATTCAGAAATGTGCACAATTGATCGTAATGGTGCAGCGGATAGAAGGAAA
TTATCGTTAGCGCCATATCCGACGAAGAAAGGTTATGATCGTGATGAATGGCCGATGGCGATGTGTAAGGAAGGCGGAAA
AGGAGCCCATATTGAATATATAAGTCCAGCAGATAACCGCGGTGCAGGTTCTTGGGTAGGGAATAAGCTAGACAAATATC
CAGATGGTACGCGTGTGAAATTTGAAGTGAAATAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(47-140)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

69.027

78.472

0.542

Multiple sequence alignment