Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   EXW51_RS10100 Genome accession   NZ_CP036043
Coordinates   1917596..1917883 (+) Length   95 a.a.
NCBI ID   WP_215574818.1    Uniprot ID   -
Organism   Bacillus mycoides strain BPN58/4     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1912596..1922883
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW51_RS10080 (EXW51_10280) - 1913778..1913976 (+) 199 Protein_1839 DUF4083 domain-containing protein -
  EXW51_RS10085 (EXW51_10285) - 1914007..1914468 (+) 462 WP_002135797.1 NUDIX hydrolase -
  EXW51_RS10090 (EXW51_10290) nadE 1914513..1915331 (-) 819 WP_002064947.1 ammonia-dependent NAD(+) synthetase -
  EXW51_RS10095 (EXW51_10295) - 1915596..1917476 (+) 1881 WP_215574817.1 ABC transporter permease -
  EXW51_RS10100 (EXW51_10300) abrB 1917596..1917883 (+) 288 WP_215574818.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  EXW51_RS10105 (EXW51_10305) - 1918219..1919169 (+) 951 WP_002012402.1 serine protease -
  EXW51_RS10110 (EXW51_10310) - 1919210..1919518 (-) 309 WP_002064951.1 helix-turn-helix transcriptional regulator -
  EXW51_RS10115 (EXW51_10315) - 1919626..1920561 (+) 936 WP_215574819.1 aldo/keto reductase -
  EXW51_RS10120 (EXW51_10320) - 1920611..1920814 (+) 204 WP_002012406.1 hypothetical protein -
  EXW51_RS10125 (EXW51_10325) - 1920845..1921069 (-) 225 WP_002064959.1 hypothetical protein -
  EXW51_RS10130 (EXW51_10330) - 1921154..1921501 (-) 348 WP_000426320.1 DUF4257 domain-containing protein -
  EXW51_RS10135 (EXW51_10335) - 1921698..1922209 (+) 512 Protein_1850 DinB family protein -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10575.35 Da        Isoelectric Point: 8.0003

>NTDB_id=346180 EXW51_RS10100 WP_215574818.1 1917596..1917883(+) (abrB) [Bacillus mycoides strain BPN58/4]
MKATGIIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVEGDKVILQKYQPYNACQITGDVSDQNISLANGNITVSIEGAK
HVIKEIEQFLNKSKI

Nucleotide


Download         Length: 288 bp        

>NTDB_id=346180 EXW51_RS10100 WP_215574818.1 1917596..1917883(+) (abrB) [Bacillus mycoides strain BPN58/4]
ATGAAAGCAACAGGAATTATTCGAAAAGTAGATGAATTGGGACGGATAGTTATTCCTAAAGAATTACGAGATGTATTAGG
AATACAAATCAAATCACCACTTGAAATTTTTGTAGAAGGAGACAAAGTCATTTTACAAAAATATCAACCTTACAATGCTT
GTCAAATAACAGGTGATGTTTCAGATCAAAATATTTCATTAGCAAATGGAAACATTACTGTTAGTATAGAAGGGGCAAAA
CATGTAATAAAAGAAATTGAGCAGTTTTTGAACAAGAGTAAGATTTAG

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)

AbrB C-terminal domain (AbrB_C)

(53-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

56.383

98.947

0.558

Multiple sequence alignment