Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   EXW62_RS24260 Genome accession   NZ_CP036034
Coordinates   4741891..4743243 (-) Length   450 a.a.
NCBI ID   WP_286675779.1    Uniprot ID   -
Organism   Bacillus mycoides strain BPN57/2     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4736891..4748243
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW62_RS24235 (EXW62_24760) - 4738276..4739214 (-) 939 WP_215554721.1 YafY family protein -
  EXW62_RS24240 (EXW62_24765) - 4739297..4739740 (+) 444 WP_215554722.1 VOC family protein -
  EXW62_RS24245 (EXW62_24770) raiA 4739999..4740541 (-) 543 WP_215554723.1 ribosome-associated translation inhibitor RaiA -
  EXW62_RS24250 (EXW62_24775) cspC 4740863..4741060 (-) 198 WP_215554724.1 cold shock protein CspC -
  EXW62_RS24255 (EXW62_24780) - 4741187..4741891 (-) 705 WP_215554725.1 ComF family protein -
  EXW62_RS24260 (EXW62_24785) comFA 4741891..4743243 (-) 1353 WP_286675779.1 ATP-dependent helicase ComFA Machinery gene
  EXW62_RS24265 (EXW62_24790) - 4743368..4744684 (-) 1317 WP_215554726.1 C40 family peptidase -
  EXW62_RS24270 (EXW62_24795) - 4744947..4745261 (-) 315 WP_002159869.1 helix-turn-helix domain-containing protein -
  EXW62_RS24275 (EXW62_24800) - 4745424..4746266 (-) 843 WP_215554727.1 DegV family protein -
  EXW62_RS24280 (EXW62_24810) - 4746657..4747292 (+) 636 WP_215554728.1 YigZ family protein -

Sequence

Protein


Download         Length: 450 a.a.        Molecular weight: 51039.56 Da        Isoelectric Point: 9.6138

>NTDB_id=346101 EXW62_RS24260 WP_286675779.1 4741891..4743243(-) (comFA) [Bacillus mycoides strain BPN57/2]
MVLAGRQLLLEELSSDLQDKLDHLKRNREVVCVQGVIKKSSKYMCQRCGNIEQRLFASFLCKRCNKVCTYCRKCITMGRV
SECAVLVRGIAEISGENYLNPLQWEGVLSAGQELAAQSVVDAVKQKESFFIWAVCGAGKTEMLFRGIAEALQKGERVCIA
TPRTDVVLELAPRLQEVFPNINVAALYGGSLDREKDAALIVATTHQLLRYYRAFHVMIVDEIDAFPYHTDKMLHYAVNEA
MKEEAARIYLTATPDEKWKRKLRNGKQKGVIISGRYHRQPLPVPIFRWCGNWKKGLMRKKIPRALLQWLNMYLSKRYPIF
LFVPHVRYVEEISQLLKSLNNQIDGVHAEDMARKEKVAAFRKGEIPLLVTTTILERGVTVKNLQVAVLGAEEEIFSESAL
VQIAGRAGRSSDEPHGDVIYFHYGKTAAMVRAKKHIQSMNKNAKEQGLID

Nucleotide


Download         Length: 1353 bp        

>NTDB_id=346101 EXW62_RS24260 WP_286675779.1 4741891..4743243(-) (comFA) [Bacillus mycoides strain BPN57/2]
ATGGTGTTAGCTGGTAGACAGTTACTGTTAGAAGAACTTTCTTCAGATTTGCAGGATAAATTGGATCATTTGAAAAGGAA
TCGAGAAGTCGTTTGTGTACAAGGGGTAATTAAGAAATCTTCAAAATATATGTGCCAGCGCTGTGGAAATATAGAGCAGC
GACTATTTGCATCATTTCTATGTAAAAGGTGCAATAAAGTATGTACGTATTGCCGGAAATGTATAACGATGGGCAGGGTA
AGTGAATGTGCTGTACTTGTTCGCGGGATTGCTGAAATAAGCGGAGAAAATTATTTGAATCCGTTACAGTGGGAAGGCGT
TTTGTCTGCTGGTCAGGAGTTAGCTGCGCAAAGTGTCGTTGACGCTGTTAAGCAGAAAGAATCATTTTTTATTTGGGCGG
TGTGCGGGGCTGGAAAAACAGAAATGTTGTTTCGCGGAATTGCAGAGGCACTACAAAAGGGAGAGAGAGTTTGTATTGCA
ACGCCGAGAACGGATGTTGTACTTGAATTAGCACCAAGATTACAAGAAGTGTTTCCAAATATAAATGTAGCTGCTTTATA
CGGAGGGAGTTTAGACCGAGAAAAAGATGCGGCGTTAATCGTTGCAACTACACATCAATTGTTACGTTATTATAGGGCGT
TCCATGTCATGATTGTAGATGAGATAGATGCTTTTCCGTATCATACAGATAAGATGTTGCATTATGCAGTAAACGAAGCG
ATGAAAGAGGAGGCAGCACGTATTTATTTAACTGCAACTCCAGATGAAAAGTGGAAGCGTAAATTGCGGAATGGTAAGCA
AAAAGGGGTTATTATTTCAGGACGTTATCATCGTCAGCCATTGCCAGTCCCGATATTTCGGTGGTGCGGAAATTGGAAAA
AGGGTCTTATGCGTAAAAAAATCCCTCGTGCTTTATTACAATGGTTAAATATGTACTTATCTAAACGATACCCCATTTTT
CTATTTGTTCCACATGTGCGATATGTAGAAGAAATTAGCCAGTTATTAAAATCATTAAACAATCAAATTGACGGTGTGCA
TGCAGAAGATATGGCGAGAAAAGAGAAGGTAGCAGCTTTTAGAAAGGGAGAAATCCCTTTATTAGTTACAACGACGATTT
TGGAACGAGGAGTAACTGTGAAAAATTTACAAGTAGCAGTTTTAGGAGCTGAGGAAGAAATATTTTCAGAAAGTGCTCTC
GTTCAAATTGCAGGGCGTGCTGGCAGAAGCTCTGATGAACCGCATGGAGATGTCATCTATTTTCATTATGGAAAGACAGC
GGCGATGGTGCGTGCGAAAAAACATATTCAAAGTATGAATAAGAATGCTAAAGAACAAGGATTGATAGATTGA

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(108-255)

Helicase conserved C-terminal domain (Helicase_C)

(314-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

50.452

98.222

0.496
  comFA Latilactobacillus sakei subsp. sakei 23K

38.53

99.778

0.384

Multiple sequence alignment