Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   EXW62_RS20050 Genome accession   NZ_CP036034
Coordinates   3956234..3956980 (-) Length   248 a.a.
NCBI ID   WP_016106175.1    Uniprot ID   R8Q2I7
Organism   Bacillus mycoides strain BPN57/2     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 3951234..3961980
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW62_RS20030 (EXW62_20485) dnaG 3951961..3953763 (-) 1803 WP_215554210.1 DNA primase -
  EXW62_RS20035 - 3954069..3954260 (-) 192 WP_252188737.1 hypothetical protein -
  EXW62_RS20040 (EXW62_20495) - 3954653..3955465 (-) 813 WP_215554211.1 pyruvate, water dikinase regulatory protein -
  EXW62_RS20045 (EXW62_20500) - 3955495..3956127 (-) 633 WP_215556635.1 helix-turn-helix transcriptional regulator -
  EXW62_RS20050 (EXW62_20505) recO 3956234..3956980 (-) 747 WP_016106175.1 DNA repair protein RecO Machinery gene
  EXW62_RS20055 (EXW62_20510) - 3957014..3957157 (-) 144 WP_000883924.1 YqzL family protein -
  EXW62_RS20060 (EXW62_20515) era 3957334..3958239 (-) 906 WP_002160449.1 GTPase Era -
  EXW62_RS20065 (EXW62_20520) - 3958232..3958630 (-) 399 WP_002111886.1 cytidine deaminase -
  EXW62_RS20070 (EXW62_20525) - 3958730..3959083 (-) 354 WP_215554212.1 diacylglycerol kinase family protein -
  EXW62_RS20075 (EXW62_20530) ybeY 3959080..3959550 (-) 471 WP_215554213.1 rRNA maturation RNase YbeY -
  EXW62_RS20080 (EXW62_20535) - 3959547..3961691 (-) 2145 WP_215554214.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 28583.10 Da        Isoelectric Point: 7.7708

>NTDB_id=346091 EXW62_RS20050 WP_016106175.1 3956234..3956980(-) (recO) [Bacillus mycoides strain BPN57/2]
MFQKVEGIVIRTTDYGETNKIVTIYSREFGKISAMARGAKKPKSRLAAISQLMTHGHFLIQIGSGLGTLQQGEIISSMKE
IREDIFLTAYASFIIELTDKATEDKKHNPYLFEMLYQTLHYMCEGVDPEALSLIYQTKMLPVLGMHPYFDTCAICHQETD
FVAFSVREGGFLCSRHAEQDPYRIPVGEAVHKLLRLFLHFDLHRLGNVSVKDSTKKQMRTVLNTYYDEYCGIYLKTRRFL
EQLDKFQI

Nucleotide


Download         Length: 747 bp        

>NTDB_id=346091 EXW62_RS20050 WP_016106175.1 3956234..3956980(-) (recO) [Bacillus mycoides strain BPN57/2]
ATGTTTCAAAAAGTTGAGGGCATTGTCATCCGTACAACAGATTACGGAGAAACAAATAAGATTGTTACAATATACTCACG
GGAATTTGGTAAGATAAGTGCAATGGCAAGAGGGGCGAAAAAACCGAAGAGTCGGTTAGCGGCTATTTCGCAACTTATGA
CACATGGTCATTTTCTTATTCAAATTGGATCTGGACTTGGAACTTTGCAACAAGGCGAGATTATTTCATCTATGAAAGAA
ATTCGCGAGGATATATTTTTAACTGCTTATGCATCATTTATTATCGAATTAACTGATAAAGCAACAGAAGATAAGAAGCA
TAATCCGTATTTATTTGAAATGTTATATCAAACGTTGCATTATATGTGTGAGGGTGTTGACCCAGAAGCATTATCATTAA
TTTATCAAACGAAAATGCTTCCGGTATTAGGGATGCACCCGTACTTTGATACATGTGCTATTTGTCATCAAGAAACAGAT
TTTGTCGCCTTCTCTGTCAGGGAAGGCGGTTTTCTGTGCTCGCGTCATGCGGAACAAGATCCGTATCGTATTCCGGTGGG
AGAGGCTGTTCATAAATTATTACGTCTCTTTCTTCACTTCGATTTACACCGGCTCGGTAATGTATCGGTGAAGGATAGTA
CAAAAAAACAAATGCGTACAGTATTGAATACATATTATGATGAATATTGTGGGATTTATTTGAAAACAAGGCGTTTCTTG
GAACAACTTGATAAGTTTCAAATATAA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-77)

Recombination protein O C terminal (RecO_C)

(82-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB R8Q2I7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

55.466

99.597

0.552

Multiple sequence alignment