Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   EXW62_RS18480 Genome accession   NZ_CP036034
Coordinates   3684372..3684806 (-) Length   144 a.a.
NCBI ID   WP_193644952.1    Uniprot ID   -
Organism   Bacillus mycoides strain BPN57/2     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3679372..3689806
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW62_RS18465 (EXW62_18875) - 3680537..3681094 (+) 558 WP_002160661.1 PadR family transcriptional regulator -
  EXW62_RS18470 (EXW62_18880) metE 3681614..3683902 (+) 2289 WP_215554036.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  EXW62_RS18475 (EXW62_18885) comJ 3683943..3684332 (-) 390 WP_215554037.1 competence protein ComJ -
  EXW62_RS18480 (EXW62_18890) nucA/comI 3684372..3684806 (-) 435 WP_193644952.1 DNA-entry nuclease Machinery gene
  EXW62_RS18485 (EXW62_18895) - 3685043..3685786 (+) 744 WP_215554038.1 DUF3967 domain-containing protein -
  EXW62_RS18490 (EXW62_18900) - 3685846..3687120 (-) 1275 WP_215554039.1 HAMP domain-containing sensor histidine kinase -
  EXW62_RS18495 (EXW62_18905) - 3687430..3687630 (+) 201 WP_002145970.1 hypothetical protein -
  EXW62_RS18500 (EXW62_18910) - 3687874..3689037 (+) 1164 WP_215554040.1 aminotransferase A -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16228.61 Da        Isoelectric Point: 8.4331

>NTDB_id=346087 EXW62_RS18480 WP_193644952.1 3684372..3684806(-) (nucA/comI) [Bacillus mycoides strain BPN57/2]
MKQFKGIIISIIAILSLLVAVYEVFVPEETSTKKTTTYDQILEFPKERYPETGKHITDAIKEGHSEMCTIDRNGAADRRK
LSLAPYPTKKGYDRDEWPMAMCKEGGKGAHIEYISPADNRGAGSWVGNKLDKYPDGTRVKFEVK

Nucleotide


Download         Length: 435 bp        

>NTDB_id=346087 EXW62_RS18480 WP_193644952.1 3684372..3684806(-) (nucA/comI) [Bacillus mycoides strain BPN57/2]
ATGAAGCAATTTAAAGGTATTATCATTTCAATTATTGCAATTCTTTCTCTTTTGGTAGCGGTATATGAAGTATTTGTGCC
AGAGGAGACAAGTACTAAAAAAACAACTACGTATGATCAAATTCTAGAGTTCCCGAAAGAACGATATCCAGAGACCGGGA
AACATATAACGGATGCTATAAAAGAAGGGCATTCAGAAATGTGCACAATTGATCGTAATGGTGCAGCGGATAGAAGGAAA
TTATCGTTAGCGCCATATCCGACGAAGAAAGGTTATGATCGTGATGAATGGCCGATGGCGATGTGTAAGGAAGGCGGAAA
AGGAGCCCATATTGAATATATAAGTCCAGCAGATAACCGCGGTGCAGGTTCTTGGGTAGGGAATAAGCTAGACAAATATC
CAGATGGTACGCGTGTGAAATTTGAAGTGAAATAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(47-140)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

65.833

83.333

0.549

Multiple sequence alignment