Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   EXW62_RS09360 Genome accession   NZ_CP036034
Coordinates   1841844..1842131 (+) Length   95 a.a.
NCBI ID   WP_002118493.1    Uniprot ID   -
Organism   Bacillus mycoides strain BPN57/2     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1836844..1847131
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW62_RS09340 (EXW62_09515) - 1838027..1838224 (+) 198 WP_085310559.1 DUF4083 domain-containing protein -
  EXW62_RS09345 (EXW62_09520) - 1838255..1838716 (+) 462 WP_002135797.1 NUDIX hydrolase -
  EXW62_RS09350 (EXW62_09525) nadE 1838761..1839579 (-) 819 WP_215556074.1 ammonia-dependent NAD(+) synthetase -
  EXW62_RS09355 (EXW62_09530) - 1839844..1841724 (+) 1881 WP_215556075.1 ABC transporter permease -
  EXW62_RS09360 (EXW62_09535) abrB 1841844..1842131 (+) 288 WP_002118493.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  EXW62_RS09365 (EXW62_09540) - 1842468..1843418 (+) 951 WP_215556076.1 serine protease -
  EXW62_RS09370 (EXW62_09545) - 1843459..1843767 (-) 309 WP_215556077.1 helix-turn-helix transcriptional regulator -
  EXW62_RS09375 (EXW62_09550) - 1843833..1844768 (+) 936 WP_215556078.1 aldo/keto reductase -
  EXW62_RS09380 (EXW62_09555) - 1844967..1845191 (-) 225 WP_199671649.1 hypothetical protein -
  EXW62_RS09385 (EXW62_09560) - 1845276..1845623 (-) 348 WP_098775991.1 DUF4257 domain-containing protein -
  EXW62_RS09390 (EXW62_09565) - 1845820..1846347 (+) 528 WP_215556079.1 DinB family protein -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10648.36 Da        Isoelectric Point: 5.1423

>NTDB_id=346078 EXW62_RS09360 WP_002118493.1 1841844..1842131(+) (abrB) [Bacillus mycoides strain BPN57/2]
MKATGIIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVEEDKVILQKYQPYNACQITGDVSDQNISLANGNITVSIEGAK
HVIKEIEQFLNKSEI

Nucleotide


Download         Length: 288 bp        

>NTDB_id=346078 EXW62_RS09360 WP_002118493.1 1841844..1842131(+) (abrB) [Bacillus mycoides strain BPN57/2]
ATGAAAGCAACAGGAATTATTCGAAAAGTAGATGAATTGGGACGGATAGTTATTCCTAAAGAATTACGAGATGTATTAGG
AATACAAATCAAATCACCACTTGAAATTTTTGTAGAAGAAGACAAAGTCATTTTACAAAAATATCAACCTTACAATGCTT
GTCAAATAACAGGTGATGTTTCAGACCAAAATATTTCATTAGCAAATGGAAACATTACTGTTAGTATAGAAGGGGCAAAA
CATGTAATAAAAGAAATTGAGCAGTTTTTGAACAAGAGTGAGATTTAG

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

57.778

94.737

0.547

Multiple sequence alignment