Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   EXW62_RS07490 Genome accession   NZ_CP036034
Coordinates   1445702..1446304 (-) Length   200 a.a.
NCBI ID   WP_000155584.1    Uniprot ID   J8ATF7
Organism   Bacillus mycoides strain BPN57/2     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1440702..1451304
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW62_RS07470 (EXW62_07610) dnaD 1440987..1441694 (+) 708 WP_078181042.1 DNA replication protein DnaD -
  EXW62_RS07475 (EXW62_07615) nth 1441710..1442357 (+) 648 WP_215555797.1 endonuclease III -
  EXW62_RS07480 (EXW62_07620) - 1442361..1442879 (+) 519 WP_215555798.1 YpoC family protein -
  EXW62_RS07485 (EXW62_07625) - 1442906..1445635 (-) 2730 WP_215555799.1 penicillin-binding protein 1A -
  EXW62_RS07490 (EXW62_07630) recU 1445702..1446304 (-) 603 WP_000155584.1 Holliday junction resolvase RecU Machinery gene
  EXW62_RS07495 (EXW62_07635) - 1446408..1447433 (+) 1026 WP_215555800.1 DUF2515 domain-containing protein -
  EXW62_RS28585 - 1447662..1447808 (-) 147 WP_306475192.1 phage portal protein -
  EXW62_RS07500 (EXW62_07640) - 1447927..1448169 (+) 243 WP_215555801.1 hypothetical protein -
  EXW62_RS07505 (EXW62_07645) - 1448185..1448529 (+) 345 WP_215555802.1 YppE family protein -
  EXW62_RS07510 (EXW62_07650) - 1448556..1448747 (-) 192 WP_002030817.1 YppF family protein -
  EXW62_RS07515 (EXW62_07655) - 1448925..1449536 (+) 612 WP_215555803.1 YppG family protein -
  EXW62_RS07520 (EXW62_07660) - 1449693..1450184 (+) 492 WP_215555804.1 CotD family spore coat protein -
  EXW62_RS07525 (EXW62_07665) - 1450241..1450795 (+) 555 WP_215555805.1 DUF1273 domain-containing protein -
  EXW62_RS07530 (EXW62_07670) gpsB 1450893..1451228 (+) 336 WP_215555806.1 cell division regulator GpsB -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 23361.62 Da        Isoelectric Point: 9.5601

>NTDB_id=346077 EXW62_RS07490 WP_000155584.1 1445702..1446304(-) (recU) [Bacillus mycoides strain BPN57/2]
MTIRYPNGKRYDQASQPHKTPIKKHTYSNRGMSLEEELNETNQYYLTHNIACVHKKPTPLQIVKVDYPARSAAVVKEAYF
KQPSTTDYNGVYKGKYIDFEAKETKNKTSFPLQNFHLHQIEHMKQVVAHNGIAFVIIKFTLFDEFYLLDAKHIIAFWNRQ
NTGGRKSITKQEIEEHGSLLSCGYHPRIDYIRVLDTVYFS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=346077 EXW62_RS07490 WP_000155584.1 1445702..1446304(-) (recU) [Bacillus mycoides strain BPN57/2]
ATGACCATTCGTTACCCAAATGGAAAAAGGTACGATCAAGCTTCACAACCTCATAAAACACCAATAAAAAAACATACTTA
CAGTAATAGAGGTATGTCCCTTGAAGAGGAATTGAATGAAACCAATCAATATTACTTAACCCATAATATTGCATGCGTAC
ATAAAAAACCTACACCTCTTCAAATTGTAAAAGTAGATTACCCCGCTCGAAGTGCTGCAGTGGTAAAAGAAGCGTATTTC
AAACAACCTTCTACAACAGATTACAACGGTGTATACAAAGGGAAATATATCGATTTTGAAGCGAAAGAGACTAAAAATAA
AACCAGTTTTCCACTTCAAAACTTCCACCTTCATCAAATTGAACATATGAAGCAAGTAGTCGCTCATAATGGAATTGCAT
TTGTTATTATTAAATTTACACTTTTTGATGAATTTTATTTATTAGATGCAAAACATATTATTGCATTTTGGAATCGTCAA
AATACTGGTGGACGTAAATCGATTACAAAACAAGAAATAGAAGAGCATGGGTCTTTATTATCATGCGGTTATCACCCTCG
AATTGATTATATCCGCGTACTAGACACGGTTTATTTTTCGTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(30-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB J8ATF7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

63

100

0.63

Multiple sequence alignment