Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   EXW62_RS06125 Genome accession   NZ_CP036034
Coordinates   1191225..1191548 (-) Length   107 a.a.
NCBI ID   WP_002011473.1    Uniprot ID   A0A366GDN4
Organism   Bacillus mycoides strain BPN57/2     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1186225..1196548
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW62_RS06100 (EXW62_06245) - 1186449..1187735 (+) 1287 WP_215555626.1 D-alanyl-D-alanine carboxypeptidase family protein -
  EXW62_RS06105 (EXW62_06250) sipW 1187937..1188506 (+) 570 WP_215555627.1 signal peptidase I SipW -
  EXW62_RS06110 (EXW62_06255) - 1188569..1189156 (+) 588 WP_215555628.1 CalY family protein -
  EXW62_RS06115 (EXW62_06260) - 1189292..1190161 (+) 870 WP_215555629.1 DUF4047 domain-containing protein -
  EXW62_RS06120 (EXW62_06265) calY 1190549..1191142 (+) 594 WP_215555630.1 biofilm matrix protein CalY -
  EXW62_RS06125 (EXW62_06270) sinR 1191225..1191548 (-) 324 WP_002011473.1 helix-turn-helix domain-containing protein Regulator
  EXW62_RS06130 (EXW62_06275) - 1191628..1191762 (-) 135 WP_002011474.1 anti-repressor SinI family protein -
  EXW62_RS06135 (EXW62_06280) inhA1 1192105..1194492 (+) 2388 WP_215555631.1 M6 family metalloprotease immune inhibitor InhA1 -
  EXW62_RS06140 (EXW62_06285) - 1194664..1196031 (+) 1368 WP_215555632.1 aldehyde dehydrogenase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12304.07 Da        Isoelectric Point: 7.2050

>NTDB_id=346075 EXW62_RS06125 WP_002011473.1 1191225..1191548(-) (sinR) [Bacillus mycoides strain BPN57/2]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTTESHLDSEWTQLV
KDAMSSGVSKEQFREFLEFTQWKKNQQ

Nucleotide


Download         Length: 324 bp        

>NTDB_id=346075 EXW62_RS06125 WP_002011473.1 1191225..1191548(-) (sinR) [Bacillus mycoides strain BPN57/2]
ATGATAGGAGAACGTATAAAACGCCTTCGTTTACAAAAAGGCATTTCATTAACAGAACTCGCCGAAAAAGCTGGTGTCGC
TAAATCTTACATTAGTTCTATAGAACGGAATTTACAAAAAAACCCTTCTATTCAGTTTCTTGAAAAAATTGCAGCTGTTC
TACAAATTCCAGTTGATACTTTACTTCACGATGAAACAACAACGGAAAGTCATCTAGACTCCGAATGGACACAGCTCGTT
AAAGATGCGATGAGCTCTGGTGTCTCAAAAGAACAGTTTCGTGAATTTCTCGAATTTACACAATGGAAGAAAAATCAACA
ATAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-60)

Anti-repressor SinI (SinI)

(72-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A366GDN4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

66.972

100

0.682

Multiple sequence alignment