Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   EXW38_RS19660 Genome accession   NZ_CP036026
Coordinates   3813508..3813966 (+) Length   152 a.a.
NCBI ID   WP_002160666.1    Uniprot ID   J8FDK7
Organism   Bacillus mycoides strain BPN54/2     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 3808508..3818966
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW38_RS19645 (EXW38_19925) - 3809172..3809408 (+) 237 WP_002145984.1 hypothetical protein -
  EXW38_RS19650 (EXW38_19930) - 3809575..3811683 (-) 2109 WP_215572003.1 polyphosphate kinase -
  EXW38_RS19655 (EXW38_19935) - 3811792..3813366 (-) 1575 WP_131230653.1 Ppx/GppA family phosphatase -
  EXW38_RS19660 (EXW38_19940) kre 3813508..3813966 (+) 459 WP_002160666.1 YkyB family protein Regulator
  EXW38_RS19665 (EXW38_19945) - 3813998..3814660 (-) 663 WP_002066948.1 YkyA family protein -
  EXW38_RS19670 (EXW38_19950) - 3815214..3815867 (-) 654 WP_215572004.1 diguanylate cyclase domain-containing protein -
  EXW38_RS19675 (EXW38_19955) - 3816032..3816265 (+) 234 WP_002160664.1 phage holin -
  EXW38_RS19680 (EXW38_19960) - 3816297..3816797 (-) 501 WP_002160663.1 hypothetical protein -
  EXW38_RS19685 (EXW38_19965) - 3817259..3818800 (+) 1542 WP_002145976.1 MDR family MFS transporter -

Sequence

Protein


Download         Length: 152 a.a.        Molecular weight: 17785.46 Da        Isoelectric Point: 10.6793

>NTDB_id=346036 EXW38_RS19660 WP_002160666.1 3813508..3813966(+) (kre) [Bacillus mycoides strain BPN54/2]
MKPSQPQSQLHNQHSINRLAQSIFVVNRHAKAATNPKYLYWLKKTALERLITEKKAIKEGLHFSRNPRFSQQQSDVLIRL
GDYFFHIPPTKDDFRTLPHLGHLESSYRNPKTTLSLTIAKKTLQDYIGPEALKQEKKLNEAVPWYSRTYTKK

Nucleotide


Download         Length: 459 bp        

>NTDB_id=346036 EXW38_RS19660 WP_002160666.1 3813508..3813966(+) (kre) [Bacillus mycoides strain BPN54/2]
ATGAAACCTTCACAACCCCAATCTCAATTACATAATCAACATTCTATTAATAGACTAGCTCAATCTATTTTCGTTGTGAA
TCGTCATGCTAAAGCTGCAACTAACCCTAAGTACTTATATTGGTTAAAAAAGACTGCTTTAGAACGCTTAATTACTGAAA
AAAAGGCTATCAAAGAAGGATTACATTTTTCTAGAAATCCACGTTTTAGTCAACAACAATCCGATGTTCTTATACGTTTA
GGTGATTATTTTTTCCATATCCCTCCTACGAAAGATGATTTTCGCACCCTACCGCATCTTGGTCACCTTGAATCCTCCTA
TCGAAATCCGAAAACAACCTTATCTTTAACAATAGCAAAAAAAACACTTCAAGATTATATTGGTCCTGAAGCATTAAAAC
AAGAAAAAAAATTAAACGAAGCAGTTCCATGGTATAGCCGTACCTATACAAAAAAATAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(16-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB J8FDK7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

57.746

93.421

0.539

Multiple sequence alignment