Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   EXW38_RS10005 Genome accession   NZ_CP036026
Coordinates   1917799..1918086 (+) Length   95 a.a.
NCBI ID   WP_002148618.1    Uniprot ID   J8DCP1
Organism   Bacillus mycoides strain BPN54/2     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1912799..1923086
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW38_RS09985 (EXW38_10100) - 1913970..1914170 (+) 201 WP_215572691.1 DUF4083 domain-containing protein -
  EXW38_RS09990 (EXW38_10105) - 1914198..1914659 (+) 462 WP_002158230.1 NUDIX hydrolase -
  EXW38_RS09995 (EXW38_10110) nadE 1914709..1915527 (-) 819 WP_002158229.1 ammonia-dependent NAD(+) synthetase -
  EXW38_RS10000 (EXW38_10115) - 1915798..1917678 (+) 1881 WP_215572692.1 FtsX-like permease family protein -
  EXW38_RS10005 (EXW38_10120) abrB 1917799..1918086 (+) 288 WP_002148618.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  EXW38_RS10010 (EXW38_10125) - 1918267..1919217 (+) 951 WP_002158227.1 serine protease -
  EXW38_RS10015 (EXW38_10130) - 1919302..1919403 (+) 102 Protein_1901 IS6 family transposase -
  EXW38_RS10020 (EXW38_10135) - 1919418..1920521 (-) 1104 WP_131231239.1 ABC transporter ATP-binding protein -
  EXW38_RS10025 (EXW38_10140) - 1920925..1921788 (-) 864 WP_002202313.1 PucR family transcriptional regulator -
  EXW38_RS10030 (EXW38_10145) - 1921858..1922718 (-) 861 WP_215572693.1 AraC family transcriptional regulator -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10621.33 Da        Isoelectric Point: 5.1423

>NTDB_id=346029 EXW38_RS10005 WP_002148618.1 1917799..1918086(+) (abrB) [Bacillus mycoides strain BPN54/2]
MKATGIIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVEEDKVILQKYQPYNACQITGDVSDQNISLANGSITVSIEGAK
HVIKEIEQFLNKSEI

Nucleotide


Download         Length: 288 bp        

>NTDB_id=346029 EXW38_RS10005 WP_002148618.1 1917799..1918086(+) (abrB) [Bacillus mycoides strain BPN54/2]
ATGAAAGCAACAGGAATTATTCGAAAAGTAGATGAATTGGGACGGATAGTTATTCCTAAAGAATTACGAGATGTATTAGG
AATACAAATTAAATCACCACTTGAAATTTTTGTAGAAGAAGACAAAGTCATTTTACAAAAATATCAACCTTACAATGCTT
GTCAAATAACAGGTGATGTTTCAGACCAAAATATTTCATTAGCAAATGGAAGCATTACTGTTAGTATAGAAGGCGCAAAA
CATGTAATAAAAGAAATTGAGCAGTTTTTGAACAAGAGTGAGATTTAG

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB J8DCP1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

57.778

94.737

0.547

Multiple sequence alignment