Detailed information
Bioinformatically predicted
Overview
| Name | abrB | Type | Regulator |
| Locus tag | EXW38_RS02435 | Genome accession | NZ_CP036026 |
| Coordinates | 467383..467661 (+) | Length | 92 a.a. |
| NCBI ID | WP_215572336.1 | Uniprot ID | - |
| Organism | Bacillus mycoides strain BPN54/2 | ||
| Function | repression of comK; repression of rok (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 456572..496953 | 467383..467661 | within | 0 |
Gene organization within MGE regions
Location: 456572..496953
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EXW38_RS02350 (EXW38_02390) | - | 456572..457696 (-) | 1125 | WP_215572322.1 | site-specific integrase | - |
| EXW38_RS02355 (EXW38_02395) | - | 457961..458617 (-) | 657 | WP_215572323.1 | hypothetical protein | - |
| EXW38_RS02360 (EXW38_02400) | - | 458929..459492 (-) | 564 | WP_215572324.1 | DUF4352 domain-containing protein | - |
| EXW38_RS02365 (EXW38_02405) | - | 459627..459971 (-) | 345 | WP_098168470.1 | DUF4064 domain-containing protein | - |
| EXW38_RS02370 (EXW38_02410) | - | 459996..460523 (-) | 528 | WP_215572325.1 | DUF4352 domain-containing protein | - |
| EXW38_RS02375 (EXW38_02415) | - | 460739..461083 (-) | 345 | WP_215572326.1 | helix-turn-helix domain-containing protein | - |
| EXW38_RS02380 (EXW38_02420) | - | 461574..462731 (+) | 1158 | WP_215572327.1 | AimR family lysis-lysogeny pheromone receptor | - |
| EXW38_RS02385 | - | 462738..462887 (+) | 150 | WP_215572328.1 | hypothetical protein | - |
| EXW38_RS02390 (EXW38_02425) | - | 463155..463505 (-) | 351 | WP_215572329.1 | helix-turn-helix domain-containing protein | - |
| EXW38_RS02395 (EXW38_02430) | - | 463687..463920 (+) | 234 | WP_215572330.1 | helix-turn-helix domain-containing protein | - |
| EXW38_RS02400 (EXW38_02435) | - | 463948..464679 (+) | 732 | WP_215572331.1 | ORF6C domain-containing protein | - |
| EXW38_RS02405 (EXW38_02440) | - | 464726..465076 (+) | 351 | WP_215572332.1 | helix-turn-helix domain-containing protein | - |
| EXW38_RS02410 | - | 465073..465237 (+) | 165 | WP_215572972.1 | hypothetical protein | - |
| EXW38_RS02415 (EXW38_02445) | - | 465270..465452 (+) | 183 | WP_215572973.1 | hypothetical protein | - |
| EXW38_RS02420 (EXW38_02450) | - | 465459..466343 (+) | 885 | WP_215572333.1 | DnaD domain-containing protein | - |
| EXW38_RS02425 (EXW38_02455) | - | 466282..467157 (+) | 876 | WP_215572334.1 | ATP-binding protein | - |
| EXW38_RS02430 (EXW38_02460) | - | 467173..467367 (+) | 195 | WP_215572335.1 | hypothetical protein | - |
| EXW38_RS02435 (EXW38_02465) | abrB | 467383..467661 (+) | 279 | WP_215572336.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Regulator |
| EXW38_RS02440 (EXW38_02470) | - | 467654..468013 (+) | 360 | WP_215572337.1 | cell division protein SepF | - |
| EXW38_RS02445 (EXW38_02475) | - | 468032..468199 (+) | 168 | WP_002192984.1 | DUF3954 domain-containing protein | - |
| EXW38_RS02450 (EXW38_02480) | - | 468225..468476 (+) | 252 | WP_215572338.1 | helix-turn-helix domain containing protein | - |
| EXW38_RS02455 (EXW38_02485) | - | 468494..468949 (+) | 456 | WP_215572339.1 | nucleoside triphosphate pyrophosphohydrolase family protein | - |
| EXW38_RS02460 | - | 468986..469123 (+) | 138 | WP_215572340.1 | hypothetical protein | - |
| EXW38_RS02465 (EXW38_02490) | - | 469166..469513 (+) | 348 | WP_235713374.1 | hypothetical protein | - |
| EXW38_RS02470 (EXW38_02495) | - | 469689..469991 (+) | 303 | WP_088099820.1 | hypothetical protein | - |
| EXW38_RS02475 (EXW38_02500) | - | 470272..470535 (+) | 264 | WP_215572341.1 | hypothetical protein | - |
| EXW38_RS02480 (EXW38_02505) | - | 470783..470977 (+) | 195 | WP_215572342.1 | hypothetical protein | - |
| EXW38_RS02485 (EXW38_02510) | - | 471014..471376 (+) | 363 | WP_215572974.1 | hypothetical protein | - |
| EXW38_RS02490 | - | 471406..471564 (+) | 159 | WP_215572343.1 | hypothetical protein | - |
| EXW38_RS02495 (EXW38_02515) | - | 471645..471854 (+) | 210 | WP_215572344.1 | hypothetical protein | - |
| EXW38_RS02500 (EXW38_02520) | - | 471899..472021 (+) | 123 | WP_215572345.1 | DUF3983 domain-containing protein | - |
| EXW38_RS02505 (EXW38_02525) | - | 472042..472224 (+) | 183 | WP_215572346.1 | hypothetical protein | - |
| EXW38_RS02510 | - | 472336..472506 (+) | 171 | WP_083596019.1 | hypothetical protein | - |
| EXW38_RS02515 (EXW38_02530) | - | 472534..473016 (+) | 483 | WP_215572347.1 | ArpU family phage packaging/lysis transcriptional regulator | - |
| EXW38_RS02520 (EXW38_02535) | - | 473016..473558 (+) | 543 | WP_002010102.1 | site-specific integrase | - |
| EXW38_RS02525 (EXW38_02540) | - | 473790..474521 (+) | 732 | WP_215572348.1 | hypothetical protein | - |
| EXW38_RS02530 (EXW38_02545) | - | 474524..475273 (+) | 750 | WP_215572349.1 | Panacea domain-containing protein | - |
| EXW38_RS02535 (EXW38_02550) | - | 475727..476011 (+) | 285 | WP_215572915.1 | hypothetical protein | - |
| EXW38_RS02540 (EXW38_02555) | - | 476094..476390 (+) | 297 | WP_215572975.1 | hypothetical protein | - |
| EXW38_RS02545 (EXW38_02560) | - | 476353..476577 (+) | 225 | WP_235713375.1 | helix-turn-helix domain-containing protein | - |
| EXW38_RS02550 (EXW38_02565) | - | 476565..476891 (+) | 327 | WP_215572351.1 | HNH endonuclease | - |
| EXW38_RS02555 (EXW38_02570) | - | 476951..477196 (+) | 246 | WP_215572916.1 | hypothetical protein | - |
| EXW38_RS02560 (EXW38_02575) | - | 477498..477998 (+) | 501 | WP_215572352.1 | P27 family phage terminase small subunit | - |
| EXW38_RS02565 (EXW38_02580) | - | 477982..479640 (+) | 1659 | WP_215572353.1 | terminase large subunit domain-containing protein | - |
| EXW38_RS02570 (EXW38_02585) | - | 479659..480885 (+) | 1227 | WP_215572354.1 | phage portal protein | - |
| EXW38_RS02575 (EXW38_02590) | - | 480839..481552 (+) | 714 | WP_215572355.1 | head maturation protease, ClpP-related | - |
| EXW38_RS02580 (EXW38_02595) | - | 481569..482693 (+) | 1125 | WP_215572356.1 | phage major capsid protein | - |
| EXW38_RS02585 (EXW38_02600) | - | 482710..483033 (+) | 324 | WP_215572357.1 | hypothetical protein | - |
| EXW38_RS02590 (EXW38_02605) | - | 483023..483379 (+) | 357 | WP_215572358.1 | phage head-tail adapter protein | - |
| EXW38_RS02595 (EXW38_02610) | - | 483366..483746 (+) | 381 | WP_215572359.1 | hypothetical protein | - |
| EXW38_RS02600 (EXW38_02615) | - | 483736..484146 (+) | 411 | WP_215572360.1 | hypothetical protein | - |
| EXW38_RS02605 (EXW38_02620) | - | 484147..484713 (+) | 567 | WP_215572361.1 | phage tail protein | - |
| EXW38_RS02610 (EXW38_02625) | - | 484785..485153 (+) | 369 | WP_078204757.1 | hypothetical protein | - |
| EXW38_RS02615 (EXW38_02630) | - | 485335..489120 (+) | 3786 | WP_215572362.1 | phage tail tape measure protein | - |
| EXW38_RS02620 (EXW38_02635) | - | 489113..489799 (+) | 687 | WP_215572363.1 | distal tail protein Dit | - |
| EXW38_RS02625 (EXW38_02640) | - | 489796..491787 (+) | 1992 | WP_235713376.1 | phage tail spike protein | - |
| EXW38_RS02630 (EXW38_02645) | - | 491797..492066 (+) | 270 | WP_215572364.1 | transcriptional regulator | - |
| EXW38_RS02635 (EXW38_02650) | - | 492085..494595 (+) | 2511 | WP_215572365.1 | BppU family phage baseplate upper protein | - |
| EXW38_RS02640 (EXW38_02655) | - | 494687..495646 (+) | 960 | WP_215572366.1 | tyrosine-type recombinase/integrase | - |
| EXW38_RS02645 (EXW38_02660) | - | 495660..495941 (+) | 282 | WP_215572367.1 | hypothetical protein | - |
| EXW38_RS02650 (EXW38_02665) | - | 495944..496168 (+) | 225 | WP_001131589.1 | hypothetical protein | - |
| EXW38_RS02655 (EXW38_02670) | - | 496168..496953 (+) | 786 | WP_215572368.1 | N-acetylmuramoyl-L-alanine amidase | - |
Sequence
Protein
Download Length: 92 a.a. Molecular weight: 9976.46 Da Isoelectric Point: 6.2246
>NTDB_id=346016 EXW38_RS02435 WP_215572336.1 467383..467661(+) (abrB) [Bacillus mycoides strain BPN54/2]
MKNTGVARKVDDLGRVVIPVELRRTLGIAEGTSLDFHVDGENIVLRKHEKSCFVTGEVSESNIELLSGRMFLSKEGASEL
LGLLEKSGIAHA
MKNTGVARKVDDLGRVVIPVELRRTLGIAEGTSLDFHVDGENIVLRKHEKSCFVTGEVSESNIELLSGRMFLSKEGASEL
LGLLEKSGIAHA
Nucleotide
Download Length: 279 bp
>NTDB_id=346016 EXW38_RS02435 WP_215572336.1 467383..467661(+) (abrB) [Bacillus mycoides strain BPN54/2]
GTGAAAAACACAGGTGTTGCAAGAAAAGTGGACGATCTAGGGCGTGTAGTAATTCCAGTAGAGTTACGCAGAACTTTGGG
AATTGCTGAAGGAACATCATTAGACTTTCATGTTGATGGGGAAAACATCGTTTTAAGAAAACATGAAAAGTCATGTTTTG
TAACAGGTGAAGTTTCTGAATCAAACATAGAATTGCTGAGCGGACGAATGTTTTTGAGCAAGGAAGGGGCAAGTGAGTTA
CTGGGCCTTCTTGAAAAGAGTGGGATAGCACATGCCTAA
GTGAAAAACACAGGTGTTGCAAGAAAAGTGGACGATCTAGGGCGTGTAGTAATTCCAGTAGAGTTACGCAGAACTTTGGG
AATTGCTGAAGGAACATCATTAGACTTTCATGTTGATGGGGAAAACATCGTTTTAAGAAAACATGAAAAGTCATGTTTTG
TAACAGGTGAAGTTTCTGAATCAAACATAGAATTGCTGAGCGGACGAATGTTTTTGAGCAAGGAAGGGGCAAGTGAGTTA
CTGGGCCTTCTTGAAAAGAGTGGGATAGCACATGCCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| abrB | Bacillus subtilis subsp. subtilis str. 168 |
57.831 |
90.217 |
0.522 |