Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   GH773_RS05615 Genome accession   NZ_CP045791
Coordinates   1091258..1091638 (+) Length   126 a.a.
NCBI ID   WP_002776373.1    Uniprot ID   A0ABN0ERI9
Organism   Campylobacter coli strain CFSAN032805     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1086258..1096638
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GH773_RS05595 (GH773_05595) - 1086367..1088301 (-) 1935 WP_002793328.1 ribonuclease R family protein -
  GH773_RS05600 (GH773_05600) ilvC 1088424..1089446 (+) 1023 WP_002776360.1 ketol-acid reductoisomerase -
  GH773_RS05605 (GH773_05605) - 1089449..1090501 (+) 1053 WP_002776371.1 divergent polysaccharide deacetylase family protein -
  GH773_RS05610 (GH773_05610) dprA 1090491..1091261 (+) 771 WP_002781662.1 DNA-processing protein DprA Machinery gene
  GH773_RS05615 (GH773_05615) dprB 1091258..1091638 (+) 381 WP_002776373.1 Holliday junction resolvase RuvX Machinery gene
  GH773_RS05620 (GH773_05620) - 1091649..1092503 (+) 855 WP_370323062.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  GH773_RS05625 (GH773_05625) msrA 1092726..1093226 (-) 501 WP_002793323.1 peptide-methionine (S)-S-oxide reductase MsrA -
  GH773_RS05630 (GH773_05630) ppa 1093274..1093792 (-) 519 WP_002776378.1 inorganic diphosphatase -
  GH773_RS05635 (GH773_05635) - 1093802..1094377 (-) 576 WP_002781658.1 adenylate kinase -
  GH773_RS05640 (GH773_05640) aspS 1094374..1096125 (-) 1752 WP_002781656.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13949.38 Da        Isoelectric Point: 9.5520

>NTDB_id=346016 GH773_RS05615 WP_002776373.1 1091258..1091638(+) (dprB) [Campylobacter coli strain CFSAN032805]
MRALALDVGLKRIGVALCIDKIAIPLEGIIRKNRNQAANEVKNLLQIHDISLLIVGIPKGGSSEEEMTRRIKHFVSLLEF
DKEIRFVDESGTSKEALGYGVANTRKKDAKLDSLAALIMIKDYFGI

Nucleotide


Download         Length: 381 bp        

>NTDB_id=346016 GH773_RS05615 WP_002776373.1 1091258..1091638(+) (dprB) [Campylobacter coli strain CFSAN032805]
ATGAGAGCTTTGGCCTTAGATGTGGGTTTAAAGCGTATAGGCGTGGCGCTTTGTATAGATAAAATCGCCATTCCTTTAGA
AGGTATAATCAGAAAAAACCGCAACCAAGCTGCAAATGAAGTTAAAAATTTACTTCAAATTCATGATATTTCTTTATTGA
TTGTAGGTATTCCTAAGGGAGGATCGAGCGAAGAAGAAATGACAAGGCGTATCAAGCATTTTGTATCTTTGCTTGAATTC
GATAAAGAAATTCGCTTTGTAGATGAAAGCGGAACAAGTAAAGAAGCTTTAGGATATGGTGTGGCTAATACACGCAAAAA
AGATGCCAAGCTAGACTCTTTAGCAGCTTTAATCATGATAAAGGATTATTTTGGAATATAA

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-124)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

42.063

100

0.421

Multiple sequence alignment