Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   EXW49_RS20375 Genome accession   NZ_CP036023
Coordinates   4018779..4020518 (-) Length   579 a.a.
NCBI ID   WP_215588490.1    Uniprot ID   -
Organism   Bacillus mycoides strain BPN52/2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4013779..4025518
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW49_RS20345 (EXW49_20780) - 4013974..4014207 (+) 234 WP_001190193.1 DUF2627 domain-containing protein -
  EXW49_RS20350 (EXW49_20785) - 4014259..4014987 (-) 729 WP_002033957.1 glycerophosphodiester phosphodiesterase -
  EXW49_RS20355 (EXW49_20790) - 4015038..4015184 (+) 147 WP_001247671.1 YycC family protein -
  EXW49_RS20360 (EXW49_20795) - 4015425..4015988 (-) 564 WP_002033955.1 PRK06770 family protein -
  EXW49_RS20365 (EXW49_20800) spo0A 4016286..4017080 (-) 795 WP_002015081.1 sporulation transcription factor Spo0A Regulator
  EXW49_RS20370 (EXW49_20810) spoIVB 4017367..4018659 (-) 1293 WP_002015079.1 SpoIVB peptidase -
  EXW49_RS20375 (EXW49_20815) recN 4018779..4020518 (-) 1740 WP_215588490.1 DNA repair protein RecN Machinery gene
  EXW49_RS20380 (EXW49_20820) argR 4020789..4021238 (-) 450 WP_002015076.1 arginine repressor ArgR -
  EXW49_RS20385 (EXW49_20825) - 4021381..4022220 (-) 840 WP_002015074.1 TlyA family RNA methyltransferase -
  EXW49_RS20390 (EXW49_20830) dxs 4022224..4024116 (-) 1893 WP_002143098.1 1-deoxy-D-xylulose-5-phosphate synthase -
  EXW49_RS20395 (EXW49_20835) ispA 4024424..4025317 (-) 894 WP_215588491.1 polyprenyl synthetase family protein -

Sequence

Protein


Download         Length: 579 a.a.        Molecular weight: 65653.89 Da        Isoelectric Point: 5.1569

>NTDB_id=345990 EXW49_RS20375 WP_215588490.1 4018779..4020518(-) (recN) [Bacillus mycoides strain BPN52/2]
MLSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAVSLLVGGRGSAEFVRYGTEKAEIEGLFYVEDDKHPCIAK
AEELDIEIEDGMIILKRDIAANGKSVCRVNGKLVTLSILKEIGKTLVDIHGQHETQDLMNEERHMFMLDHFDGNRIVKQL
GIYQNVYTDYEKLKKQLKSLSENEQQMAHRLDLIQFQHEEIRKADLKMDEEYELTEERLKISNFEKIYKALGDAYRSLSG
DGQGLDHVRNAMGQMESITHLDEAYQENHDSIANSYYLLEEVAYQLREKLDMMEYDPKRLDEIETRLNEIRMLKRKYGNT
VEEILAYADKIEQEIFTIENKDVHIETTRKQLTKLEGVIVKEATLLSTMRHELADHLTSAIHQELKELYMEKTKFEVRIM
KRVGNVEEPLVEGTPVKLTADGYDHVEFYISTNPGEPLKPLSKVASGGELSRIILALKSIFSKHQGVASVIFDEVDTGVS
GRVAQAIAEKIYRVSVNSQVLCITHLPQVASMADSHLFIRKQVANDRTITSVTVLSTDEKVTEIARMISGVEITDLTTEH
AKELLTQAHHFKQTAEAIQ

Nucleotide


Download         Length: 1740 bp        

>NTDB_id=345990 EXW49_RS20375 WP_215588490.1 4018779..4020518(-) (recN) [Bacillus mycoides strain BPN52/2]
TTGTTATCGGAATTATCGATCAGAAACTTTGCTATTATTGAGGCATTAAATATTTCTTTTCAAAAAGGTTTAACCGTTTT
AAGTGGTGAAACAGGAGCTGGAAAATCCATTATTATTGATGCAGTTAGTTTGCTTGTTGGTGGCCGTGGTTCAGCAGAAT
TTGTTCGATATGGAACAGAAAAGGCTGAGATAGAAGGCTTATTCTATGTAGAAGATGACAAGCATCCATGTATCGCAAAG
GCAGAAGAGTTAGATATAGAAATAGAAGATGGCATGATTATTTTGAAGCGTGACATCGCTGCGAACGGAAAAAGTGTCTG
TCGTGTAAATGGGAAACTTGTTACACTCAGCATATTAAAAGAGATTGGAAAAACGCTAGTTGATATTCATGGACAGCATG
AAACACAAGATTTAATGAATGAAGAACGTCATATGTTTATGCTTGATCATTTTGATGGAAATCGCATTGTTAAACAATTG
GGCATATATCAAAATGTATATACAGACTATGAGAAGTTAAAAAAACAGCTGAAATCTTTAAGTGAAAATGAACAACAAAT
GGCCCATCGTCTAGATTTAATTCAATTCCAACATGAAGAAATTCGTAAGGCGGATTTAAAAATGGATGAAGAATATGAAT
TGACTGAGGAACGATTAAAAATCTCCAATTTTGAAAAGATTTATAAAGCATTAGGAGATGCGTATCGTTCGTTAAGTGGA
GACGGACAGGGATTGGATCACGTAAGAAATGCAATGGGACAAATGGAGAGTATTACGCACTTAGACGAAGCGTATCAAGA
AAATCATGATTCTATTGCGAATAGTTATTACTTATTAGAAGAAGTTGCATACCAGCTTAGAGAAAAATTAGATATGATGG
AATATGATCCGAAACGTCTAGATGAAATTGAAACACGTTTGAATGAAATCCGTATGTTAAAGAGAAAGTATGGAAATACT
GTAGAAGAGATTTTAGCGTATGCTGATAAAATTGAACAAGAAATTTTTACGATTGAAAATAAAGACGTACATATTGAAAC
GACGAGAAAGCAGTTAACGAAATTAGAAGGTGTTATTGTAAAAGAAGCAACGTTGTTAAGTACTATGCGTCATGAGCTTG
CAGATCATCTTACAAGCGCTATTCATCAAGAATTAAAAGAACTATATATGGAAAAAACGAAATTTGAAGTGAGAATTATG
AAGAGGGTAGGAAATGTAGAAGAACCTCTCGTGGAAGGAACACCGGTAAAACTTACGGCGGATGGCTACGATCATGTGGA
ATTTTATATTTCAACGAATCCGGGTGAACCGTTAAAGCCACTTTCAAAGGTCGCTTCTGGCGGAGAGTTATCTCGTATTA
TTTTAGCTTTAAAAAGCATTTTTTCTAAGCATCAAGGTGTTGCATCTGTTATTTTTGATGAAGTGGATACGGGTGTGAGT
GGTCGGGTTGCACAGGCTATTGCGGAAAAAATTTATCGTGTATCAGTAAACTCGCAAGTACTTTGTATTACGCACTTACC
TCAAGTAGCTTCAATGGCGGACTCTCATTTATTTATTAGAAAACAAGTGGCGAATGATCGTACGATTACATCGGTTACTG
TGTTAAGTACGGATGAAAAAGTAACAGAAATTGCTCGAATGATTTCTGGTGTTGAAATTACAGATTTAACGACAGAGCAT
GCGAAAGAGTTACTTACGCAAGCGCATCATTTCAAACAGACAGCAGAGGCTATCCAGTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

59.758

100

0.598

Multiple sequence alignment