Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   GH774_RS04175 Genome accession   NZ_CP045789
Coordinates   783997..785337 (-) Length   446 a.a.
NCBI ID   WP_002875343.1    Uniprot ID   -
Organism   Campylobacter jejuni strain CFSAN032806     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 778997..790337
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GH774_RS04150 (GH774_04150) - 779134..779904 (+) 771 WP_057036718.1 MetQ/NlpA family ABC transporter substrate-binding protein -
  GH774_RS04155 (GH774_04155) metE 779916..782180 (+) 2265 WP_057036719.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  GH774_RS04160 (GH774_04160) metF 782190..783038 (+) 849 WP_002858469.1 methylenetetrahydrofolate reductase [NAD(P)H] -
  GH774_RS04165 (GH774_04165) - 783060..783251 (-) 192 WP_002852856.1 membrane protein -
  GH774_RS04170 (GH774_04170) atpB 783248..783928 (-) 681 WP_002858390.1 F0F1 ATP synthase subunit A -
  GH774_RS04175 (GH774_04175) radA/sms 783997..785337 (-) 1341 WP_002875343.1 DNA repair protein RadA Machinery gene
  GH774_RS04180 (GH774_04180) pilA 785337..786203 (-) 867 WP_002858085.1 signal recognition particle-docking protein FtsY Machinery gene
  GH774_RS04185 (GH774_04185) - 786203..786760 (-) 558 WP_002858112.1 TlpA disulfide reductase family protein -
  GH774_RS04190 (GH774_04190) - 786843..787469 (+) 627 WP_002875342.1 5-formyltetrahydrofolate cyclo-ligase -
  GH774_RS04195 (GH774_04195) rny 787390..788943 (+) 1554 WP_002858133.1 ribonuclease Y -
  GH774_RS04200 (GH774_04200) - 788952..789509 (+) 558 WP_002856055.1 DedA family protein -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 48922.82 Da        Isoelectric Point: 7.2436

>NTDB_id=345962 GH774_RS04175 WP_002875343.1 783997..785337(-) (radA/sms) [Campylobacter jejuni strain CFSAN032806]
MAKNKALFECQACGNQQSKWLGKCPDCGAWDSFVELKAEQIKVLKELAQVSMKTSEAVCIEDVGLEHFARYSTDDNELDL
VLGGGLVEGSLVLIGGSPGVGKSTLLLKIASNLAKQGKKVLYVSGEESKAQIKLRADRLEANTPNLFLLTELCLENILEE
LHKKDYSILIVDSIQTLYSNKITSAAGSITQVREITFELMRVSKAYNISTFIIGHITKEGAIAGPRVLEHMVDVVLYFEG
DATKEIRLLRGFKNRFGGTNEVGIFEMTAKGLISAKDLANRFFTRGKAISGSALGVVMEGSRALVLEVQALVCESSYPKR
SATGYEKNRLDMLLALLERKLEIPLGHYDVFVNISGGVKVSETAADLAVVAAIISSFKNRPLSKDSIFIGELSLNGEIRE
VFSLDTRLKEAKMQKFKNAIVPSKPLEDIGLKCFVAKELSQVLEWM

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=345962 GH774_RS04175 WP_002875343.1 783997..785337(-) (radA/sms) [Campylobacter jejuni strain CFSAN032806]
ATGGCAAAAAATAAAGCACTTTTTGAATGTCAAGCTTGTGGAAATCAACAAAGCAAATGGCTTGGAAAATGTCCTGATTG
TGGAGCTTGGGATAGTTTTGTAGAATTAAAAGCTGAGCAAATTAAAGTTTTAAAAGAGCTTGCGCAAGTTAGCATGAAAA
CAAGTGAGGCTGTTTGTATTGAAGATGTGGGGTTAGAGCATTTTGCAAGATACAGCACAGATGATAATGAGCTTGATTTG
GTTTTAGGCGGAGGGCTTGTTGAAGGTTCTTTAGTGCTTATAGGCGGAAGTCCAGGTGTGGGAAAATCTACGCTTTTGTT
AAAAATTGCTTCAAATTTAGCTAAACAGGGTAAAAAAGTGCTTTATGTCAGTGGCGAAGAAAGTAAAGCCCAGATTAAAT
TAAGAGCTGATCGTCTTGAGGCTAATACTCCGAATTTATTTTTACTTACTGAACTTTGCCTTGAAAATATTTTAGAAGAA
TTGCACAAAAAAGATTATAGCATTCTTATCGTTGATTCTATACAAACTCTATATTCAAATAAAATCACTTCAGCAGCAGG
AAGCATCACTCAGGTGCGTGAGATTACTTTTGAGCTTATGCGTGTGAGTAAGGCTTATAATATCAGTACTTTTATCATAG
GGCACATTACTAAAGAAGGTGCTATAGCAGGACCTAGAGTTCTTGAGCATATGGTAGATGTGGTGCTTTATTTTGAGGGA
GATGCCACTAAAGAAATCAGACTTTTAAGAGGCTTTAAAAATCGTTTTGGTGGAACGAATGAAGTAGGTATTTTTGAGAT
GACTGCTAAGGGTTTGATCAGTGCAAAAGATTTAGCAAATCGTTTTTTTACTCGTGGAAAGGCTATTTCAGGAAGTGCTT
TAGGTGTTGTAATGGAGGGATCTCGTGCTTTGGTTTTAGAAGTTCAAGCTTTGGTGTGTGAAAGTTCTTATCCAAAACGC
AGCGCTACGGGCTATGAAAAAAATCGCTTAGATATGCTTTTGGCTTTGCTTGAAAGAAAGCTTGAAATTCCTTTGGGGCA
TTATGATGTATTTGTAAATATTAGTGGCGGAGTAAAAGTAAGCGAAACTGCGGCGGATTTGGCTGTGGTTGCAGCTATTA
TTTCAAGTTTTAAAAATCGCCCTTTGAGCAAAGATAGTATTTTTATAGGGGAGCTTAGTTTAAATGGAGAAATTAGAGAG
GTTTTTAGCCTTGATACGCGTTTAAAAGAAGCTAAAATGCAAAAATTTAAAAATGCCATTGTTCCTTCTAAGCCTTTGGA
AGATATAGGGCTTAAGTGTTTTGTTGCTAAAGAACTTTCGCAAGTTTTAGAATGGATGTAA

Domains

Predicted by InterProScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(347-423)

AAA domain (AAA_25)

(68-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

46.667

97.534

0.455
  radA Streptococcus pneumoniae Rx1

44.966

100

0.451
  radA Streptococcus pneumoniae D39

44.966

100

0.451
  radA Streptococcus pneumoniae R6

44.966

100

0.451
  radA Streptococcus pneumoniae TIGR4

44.966

100

0.451
  radA Streptococcus mitis NCTC 12261

44.944

99.776

0.448
  radA Streptococcus mitis SK321

44.944

99.776

0.448

Multiple sequence alignment