Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   EXW52_RS25500 Genome accession   NZ_CP036017
Coordinates   4942155..4943504 (-) Length   449 a.a.
NCBI ID   WP_215600795.1    Uniprot ID   -
Organism   Bacillus mycoides strain BPN51/1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4937155..4948504
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW52_RS25475 (EXW52_26010) - 4938705..4939634 (-) 930 WP_215600794.1 YafY family protein -
  EXW52_RS25480 (EXW52_26015) - 4939717..4940160 (+) 444 WP_149191057.1 VOC family protein -
  EXW52_RS25485 (EXW52_26020) hpf 4940264..4940806 (-) 543 WP_002089603.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  EXW52_RS25490 (EXW52_26025) cspC 4941127..4941324 (-) 198 WP_001990088.1 cold shock protein CspC -
  EXW52_RS25495 (EXW52_26030) - 4941451..4942155 (-) 705 WP_002129929.1 ComF family protein -
  EXW52_RS25500 (EXW52_26035) comFA 4942155..4943504 (-) 1350 WP_215600795.1 ATP-dependent helicase ComFA Machinery gene
  EXW52_RS25505 (EXW52_26040) - 4943635..4944945 (-) 1311 WP_215600796.1 NlpC/P60 family protein -
  EXW52_RS25510 (EXW52_26045) - 4945210..4945524 (-) 315 WP_002089608.1 helix-turn-helix domain-containing protein -
  EXW52_RS25515 (EXW52_26050) - 4945698..4946540 (-) 843 WP_002016143.1 DegV family protein -
  EXW52_RS25520 (EXW52_26055) - 4946779..4947414 (+) 636 WP_002034752.1 YigZ family protein -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 50818.29 Da        Isoelectric Point: 9.6730

>NTDB_id=345951 EXW52_RS25500 WP_215600795.1 4942155..4943504(-) (comFA) [Bacillus mycoides strain BPN51/1]
MLAGRQLLLKELSSDLQDKLDHLKKNRDVVCVQGVIKKSSKYMCQRCGNIEQRLFASFLCKRCNEVCTYCRKCITMGRVS
ECAVLVRGIAEISGESYLNPLQWEGVLSDGQELAAQSVVDAVKQKESFFIWAVCGAGKTEMLFRGIAEALQKGERVCIAT
PRTDVVLELAPRLQEVFPNIKVAALYGGSLDREKDAGLIVATTHQLLRYYRAFHVMIVDEIDAFPYHADKMLQYAVSEAM
KEKAARIYLTATPDEKWKRKLRSGKQKGVIISGRYHRHPLPVPIFRWCGNWKKGLIRKKIPRALLQWLNLYLSKRYPIFL
FVPHVRYVEEISQLLKSLNNQIDGVHAEDPARKEKVAAFRKGEIPLLVTTTILERGVTVKNLQVAVLGAEEEIFSESALV
QIAGRAGRSSDEPHGDVIYFHYGKTEAMVRAKKHIQSMNKNAKEQGLID

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=345951 EXW52_RS25500 WP_215600795.1 4942155..4943504(-) (comFA) [Bacillus mycoides strain BPN51/1]
ATGTTAGCTGGTAGACAGTTACTGTTAAAAGAACTTTCTTCAGATTTACAGGATAAATTGGATCATTTGAAAAAGAATCG
AGACGTCGTTTGTGTACAAGGGGTAATTAAGAAATCTTCAAAATATATGTGCCAGCGCTGCGGAAATATAGAGCAGCGAC
TATTTGCATCATTTCTATGTAAAAGGTGCAATGAAGTATGTACGTATTGCCGGAAATGTATAACGATGGGCAGGGTAAGT
GAATGTGCTGTACTTGTTCGCGGGATTGCTGAAATAAGCGGAGAAAGTTATTTGAATCCGTTACAGTGGGAAGGCGTTTT
GTCTGACGGTCAGGAGTTAGCTGCGCAAAGTGTCGTTGACGCTGTTAAGCAGAAAGAATCATTTTTTATTTGGGCGGTGT
GCGGGGCTGGAAAAACAGAAATGTTGTTTCGCGGAATTGCAGAGGCACTACAAAAGGGAGAAAGAGTTTGTATTGCAACG
CCGAGAACGGACGTTGTACTTGAATTAGCACCAAGATTACAAGAAGTGTTTCCAAATATAAAGGTAGCTGCTTTATACGG
AGGGAGTTTAGACCGAGAAAAAGATGCGGGGTTAATCGTTGCAACTACACATCAATTGTTACGTTATTATAGGGCGTTCC
ATGTCATGATTGTAGATGAGATAGATGCTTTTCCGTATCATGCAGATAAGATGTTGCAGTATGCAGTAAGCGAAGCGATG
AAAGAGAAGGCAGCACGTATTTATTTAACTGCAACTCCAGATGAAAAGTGGAAGCGTAAGTTGCGAAGTGGTAAGCAAAA
AGGGGTTATTATTTCAGGGCGATACCATCGCCATCCATTGCCAGTTCCGATATTTCGGTGGTGCGGAAATTGGAAAAAGG
GTCTTATACGTAAAAAAATTCCTCGTGCTTTATTACAATGGTTAAATCTGTACTTATCGAAACGATACCCCATTTTTTTA
TTTGTTCCTCATGTGCGATATGTAGAAGAAATTAGCCAGTTATTAAAATCATTAAACAATCAAATTGACGGTGTGCATGC
AGAAGATCCGGCGAGAAAAGAGAAGGTAGCAGCTTTCAGAAAAGGAGAAATTCCTTTATTAGTTACAACGACGATTTTGG
AACGAGGAGTAACTGTGAAAAATTTACAAGTCGCAGTTTTAGGGGCTGAGGAAGAAATATTTTCAGAAAGTGCTCTCGTT
CAAATTGCAGGGCGTGCTGGCAGAAGCTCTGATGAACCGCATGGAGATGTTATTTATTTTCATTATGGAAAGACAGAGGC
GATGGTGCGTGCGAAAAAACATATTCAAAGTATGAATAAGAATGCTAAAGAACAAGGACTGATAGATTGA

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(107-254)

Helicase conserved C-terminal domain (Helicase_C)

(313-409)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

50.679

98.441

0.499
  comFA Latilactobacillus sakei subsp. sakei 23K

40.955

88.641

0.363

Multiple sequence alignment