Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   EXW52_RS20625 Genome accession   NZ_CP036017
Coordinates   4053695..4055434 (-) Length   579 a.a.
NCBI ID   WP_002088564.1    Uniprot ID   R8I3K9
Organism   Bacillus mycoides strain BPN51/1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4048695..4060434
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW52_RS20605 (EXW52_21055) - 4048702..4049271 (-) 570 WP_215600696.1 imm11 family protein -
  EXW52_RS20610 (EXW52_21060) - 4049311..4050609 (-) 1299 WP_137077204.1 WXG100 family type VII secretion target -
  EXW52_RS20615 (EXW52_21070) spo0A 4051202..4051996 (-) 795 WP_002015081.1 sporulation transcription factor Spo0A Regulator
  EXW52_RS20620 (EXW52_21080) spoIVB 4052283..4053575 (-) 1293 WP_215600697.1 SpoIVB peptidase -
  EXW52_RS20625 (EXW52_21085) recN 4053695..4055434 (-) 1740 WP_002088564.1 DNA repair protein RecN Machinery gene
  EXW52_RS20630 (EXW52_21090) argR 4055705..4056154 (-) 450 WP_002015076.1 arginine repressor ArgR -
  EXW52_RS20635 (EXW52_21095) - 4056297..4057136 (-) 840 WP_002015074.1 TlyA family RNA methyltransferase -
  EXW52_RS20640 (EXW52_21100) dxs 4057140..4059032 (-) 1893 WP_002088566.1 1-deoxy-D-xylulose-5-phosphate synthase -
  EXW52_RS20645 (EXW52_21105) ispA 4059340..4060233 (-) 894 WP_215588491.1 polyprenyl synthetase family protein -

Sequence

Protein


Download         Length: 579 a.a.        Molecular weight: 65667.92 Da        Isoelectric Point: 5.1569

>NTDB_id=345939 EXW52_RS20625 WP_002088564.1 4053695..4055434(-) (recN) [Bacillus mycoides strain BPN51/1]
MLSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRGSAEFVRYGTEKAEIEGLFYVEDDKHPCIAK
AEELDIEIEDGMIILKRDIAANGKSVCRVNGKLVTLSILKEIGKTLVDIHGQHETQDLMNEERHMFMLDHFDGNRIVKQL
GIYQNVYTDYEKLKKQLKSLSENEQQMAHRLDLIQFQHEEIRKADLKMDEEYELTEERLKISNFEKIYKALGDAYRSLSG
DGQGLDHVRNAMGQMESITHLDEAYQENHDSIANSYYLLEEVAYQLREKLDMMEYDPKRLDEIETRLNEIRMLKRKYGNT
VEEILAYADKIEQEIFTIENKDVHIETTRKQLTKLEGVIVKEATLLSTMRHELADHLTSAIHQELKELYMEKTKFEVRIM
KRVGNVEEPLVEGTPVKLTADGYDHVEFYISTNPGEPLKPLSKVASGGELSRIILALKSIFSKHQGVASVIFDEVDTGVS
GRVAQAIAEKIYRVSVNSQVLCITHLPQVASMADSHLFIRKQVANDRTITSVTVLSTDEKVTEIARMISGVEITDLTTEH
AKELLTQAHHFKQTAEAIQ

Nucleotide


Download         Length: 1740 bp        

>NTDB_id=345939 EXW52_RS20625 WP_002088564.1 4053695..4055434(-) (recN) [Bacillus mycoides strain BPN51/1]
TTGTTATCGGAATTATCGATCAGAAACTTTGCTATTATTGAGGCATTAAATATTTCTTTTCAAAAAGGTTTAACCGTTTT
AAGTGGTGAAACAGGAGCTGGAAAATCCATTATTATTGATGCAATTAGTTTGCTTGTTGGTGGCCGTGGTTCAGCAGAAT
TTGTTCGATATGGAACAGAAAAGGCTGAGATAGAAGGCTTATTCTATGTAGAAGATGACAAGCATCCATGTATCGCAAAG
GCAGAAGAGTTAGATATAGAAATAGAAGATGGCATGATTATTTTGAAGCGTGACATCGCTGCGAACGGAAAAAGTGTCTG
TCGTGTAAATGGGAAACTTGTTACACTCAGCATATTAAAAGAGATTGGAAAAACGCTAGTTGATATTCATGGACAGCATG
AAACACAAGATTTAATGAATGAAGAGCGTCATATGTTTATGCTTGATCATTTTGATGGAAATCGCATTGTTAAACAATTG
GGCATATATCAAAATGTATATACAGACTATGAGAAGTTAAAAAAACAGCTGAAATCTTTAAGTGAAAATGAACAACAAAT
GGCCCATCGTCTAGATTTAATTCAATTCCAACATGAAGAAATTCGTAAGGCGGATTTAAAAATGGATGAAGAATATGAAT
TGACTGAGGAACGATTAAAAATCTCCAATTTTGAAAAGATTTATAAAGCATTAGGAGATGCGTATCGTTCGTTAAGTGGA
GACGGACAGGGATTGGATCACGTAAGAAATGCAATGGGACAAATGGAGAGTATTACGCACTTAGATGAAGCGTATCAAGA
AAATCATGATTCTATTGCGAATAGTTATTACTTATTAGAAGAAGTTGCATACCAGCTTAGAGAAAAATTAGATATGATGG
AATATGATCCGAAACGTCTAGATGAAATTGAAACACGTTTGAATGAAATCCGTATGTTAAAGAGAAAGTATGGAAATACT
GTAGAAGAGATTTTAGCGTATGCTGATAAAATTGAACAAGAAATTTTTACGATTGAAAATAAAGACGTACATATTGAAAC
GACGAGAAAGCAGTTAACGAAATTAGAAGGTGTTATTGTAAAAGAAGCAACGTTGTTAAGTACTATGCGTCATGAGCTTG
CAGATCATCTTACAAGCGCTATTCATCAAGAATTAAAAGAACTATATATGGAAAAAACGAAATTTGAAGTGAGAATTATG
AAGAGGGTAGGAAATGTAGAAGAACCTCTCGTGGAAGGAACACCGGTAAAACTTACGGCGGATGGCTACGATCATGTGGA
ATTTTATATTTCAACGAATCCGGGTGAACCGTTAAAGCCACTTTCAAAGGTCGCTTCTGGCGGAGAGTTATCTCGTATTA
TTTTAGCTTTAAAAAGCATTTTTTCTAAGCATCAAGGTGTTGCATCTGTTATTTTTGATGAAGTGGATACGGGTGTGAGT
GGTCGGGTTGCACAGGCTATTGCGGAAAAAATTTATCGTGTATCAGTAAACTCGCAAGTACTTTGTATTACGCACTTACC
TCAAGTAGCTTCAATGGCGGACTCTCATTTATTTATTAGAAAACAAGTGGCGAATGATCGTACGATTACATCGGTTACTG
TGTTAAGTACGGATGAAAAAGTAACAGAAATTGCTCGAATGATTTCTGGTGTTGAAATTACAGATTTAACGACAGAGCAT
GCGAAAGAGTTACTTACGCAAGCGCATCATTTCAAACAGACAGCAGAGGCTATCCAGTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB R8I3K9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

59.931

100

0.599

Multiple sequence alignment