Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   EXW52_RS06445 Genome accession   NZ_CP036017
Coordinates   1270445..1270768 (-) Length   107 a.a.
NCBI ID   WP_002064339.1    Uniprot ID   J8AHG1
Organism   Bacillus mycoides strain BPN51/1     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1265445..1275768
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW52_RS06420 (EXW52_06555) - 1265634..1266920 (+) 1287 WP_061689077.1 D-alanyl-D-alanine carboxypeptidase family protein -
  EXW52_RS06425 (EXW52_06560) sipW 1267117..1267686 (+) 570 WP_002064334.1 signal peptidase I SipW -
  EXW52_RS06430 (EXW52_06565) - 1267753..1268340 (+) 588 WP_002030432.1 CalY family protein -
  EXW52_RS06435 (EXW52_06570) - 1268502..1269335 (+) 834 WP_061688799.1 DUF4047 domain-containing protein -
  EXW52_RS06440 (EXW52_06575) calY 1269768..1270361 (+) 594 WP_061675896.1 biofilm matrix protein CalY -
  EXW52_RS06445 (EXW52_06580) sinR 1270445..1270768 (-) 324 WP_002064339.1 helix-turn-helix domain-containing protein Regulator
  EXW52_RS06450 (EXW52_06585) - 1270848..1270982 (-) 135 WP_000276220.1 anti-repressor SinI family protein -
  EXW52_RS06455 (EXW52_06590) inhA1 1271324..1273711 (+) 2388 WP_061688800.1 M6 family metalloprotease immune inhibitor InhA1 -
  EXW52_RS06460 (EXW52_06595) - 1273883..1275250 (+) 1368 WP_149190277.1 aldehyde dehydrogenase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12320.06 Da        Isoelectric Point: 7.2050

>NTDB_id=345925 EXW52_RS06445 WP_002064339.1 1270445..1270768(-) (sinR) [Bacillus mycoides strain BPN51/1]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKISAVLQIPVDTLLHDETTTESHLDSEWTQLV
KDAMSSGVSKEQFREFLEFTQWKKNQQ

Nucleotide


Download         Length: 324 bp        

>NTDB_id=345925 EXW52_RS06445 WP_002064339.1 1270445..1270768(-) (sinR) [Bacillus mycoides strain BPN51/1]
ATGATAGGAGAACGTATAAAACGCCTTCGTTTACAAAAGGGCATTTCACTAACAGAACTCGCCGAAAAAGCTGGTGTAGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAAAACCCTTCCATTCAGTTTCTCGAAAAAATTTCAGCTGTTC
TACAAATTCCAGTTGATACGTTACTTCACGATGAAACAACAACAGAAAGTCATCTAGACTCCGAATGGACACAACTCGTT
AAAGATGCGATGAGCTCCGGTGTCTCAAAAGAACAGTTTCGTGAATTTCTTGAATTTACACAATGGAAGAAAAATCAACA
ATAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-60)

Anti-repressor SinI (SinI)

(72-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB J8AHG1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

67.89

100

0.692

Multiple sequence alignment