Detailed information NTG0034592

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: LP12_RS06045
• Genome accession: NC_016811
• Coordinates: 1328129..1329154 (+)
• Length: 341 a.a.
• NCBI ID: WP_015444568.1
• Uniprot ID: Q9S4T1
• Organism: Legionella pneumophila subsp. pneumophila ATCC 43290
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1323129..1334154

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LP12_RS06015 (lp12_1215)	-	1323563..1323880 (+)	318	WP_010947009.1	DUF2845 domain-containing protein	-
LP12_RS06020 (lp12_1216)	-	1323917..1324288 (+)	372	WP_010947010.1	protease inhibitor I42 family protein	-
LP12_RS06025 (lp12_1217)	-	1324336..1326060 (-)	1725	WP_010947011.1	NAD-dependent malic enzyme	-
LP12_RS06030 (lp12_1218)	-	1326140..1326523 (+)	384	WP_010947012.1	hypothetical protein	-
LP12_RS06035 (lp12_1219)	surE	1326526..1327281 (+)	756	WP_010947013.1	5'/3'-nucleotidase SurE	-
LP12_RS06040 (lp12_1220)	-	1327300..1328043 (+)	744	WP_010947014.1	peptidoglycan DD-metalloendopeptidase family protein	-
LP12_RS06045 (lp12_1221)	rpoS	1328129..1329154 (+)	1026	WP_015444568.1	RNA polymerase sigma factor RpoS	Regulator
LP12_RS06050 (lp12_1222)	hmgA	1329257..1330507 (-)	1251	WP_010947016.1	homogentisate 1,2-dioxygenase	-
LP12_RS06055 (lp12_1223)	-	1330653..1331396 (+)	744	WP_010947017.1	YebC/PmpR family DNA-binding transcriptional regulator	-
LP12_RS06060 (lp12_1224)	ruvC	1331396..1331920 (+)	525	WP_010947018.1	crossover junction endodeoxyribonuclease RuvC	-
LP12_RS06065 (lp12_1225)	ruvA	1331917..1332516 (+)	600	WP_010947019.1	Holliday junction branch migration protein RuvA	-
LP12_RS06070 (lp12_1226)	-	1332566..1332886 (+)	321	WP_010947020.1	hypothetical protein	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 39449.70 Da
• Isoelectric Point: 4.3732

>NTDB_id=34592 LP12_RS06045 WP_015444568.1 1328129..1329154(+) (rpoS) [Legionella pneumophila subsp. pneumophila ATCC 43290]
MQDDEEPIKDKEFKEEEWSEPDDESLLSEEDVEPDIEKMEEELDELPEFTDDETFPSFQRGKNIAKALDATQLYLGEIGF
SPLLTAEEEIHYATLALKGDMEARKKMIESNLRLVVKIARRYLNRGLPLLDLIEEGNLGLMKSVEKFDPKRGFRFSTYAT
WWIRQTIERAIMNQTRTIRLPIHVVKELNVYLRAARQLTQKLDHEPSPEEIAEMVDKPLEDVQKLLGLNDKVASVDTPIG
FDETKSLLDTIADENSLNPAELLTNENLRQHIESLLDKLTENQQQVIARRFGLRGFEKATLEDVGKEIDLTRERVRQIQV
EALKTLRTLLERVGLTQEDLF

Nucleotide

• Length: 1026 bp

>NTDB_id=34592 LP12_RS06045 WP_015444568.1 1328129..1329154(+) (rpoS) [Legionella pneumophila subsp. pneumophila ATCC 43290]
ATGCAAGATGATGAAGAGCCAATTAAGGACAAGGAATTTAAAGAAGAGGAATGGTCTGAGCCAGATGATGAATCTCTGTT
GTCAGAAGAAGATGTTGAACCTGATATCGAAAAAATGGAAGAAGAGCTTGATGAACTTCCAGAGTTTACTGATGATGAAA
CTTTTCCTTCATTCCAGCGCGGGAAAAATATTGCCAAGGCTTTAGATGCGACTCAACTTTACTTGGGTGAAATTGGTTTT
TCTCCTTTGTTAACGGCTGAAGAAGAAATCCATTATGCGACTCTTGCTTTAAAAGGTGATATGGAAGCACGCAAGAAAAT
GATTGAGTCGAATTTGCGCCTGGTGGTTAAAATAGCCAGACGTTATCTTAATAGAGGATTGCCTCTTCTTGATCTAATCG
AAGAGGGTAACCTGGGTTTAATGAAGTCTGTTGAGAAATTTGACCCCAAGCGAGGATTCCGTTTTTCAACTTATGCGACC
TGGTGGATTAGGCAAACTATTGAGCGCGCAATTATGAATCAAACGAGAACTATCCGTTTGCCTATTCATGTCGTGAAAGA
ACTTAATGTTTATCTCAGAGCGGCAAGGCAATTGACGCAAAAACTGGATCATGAACCATCACCTGAAGAAATAGCAGAAA
TGGTGGATAAGCCTTTGGAGGATGTCCAAAAATTATTGGGATTGAATGATAAAGTCGCTTCAGTTGATACTCCAATTGGA
TTTGATGAAACCAAATCTTTATTAGATACAATTGCTGATGAAAACAGTTTAAATCCTGCAGAGCTGCTAACCAATGAGAA
TTTAAGGCAGCATATAGAATCTCTTCTGGATAAATTAACTGAGAATCAACAGCAGGTTATCGCAAGACGTTTTGGGTTAA
GAGGTTTTGAAAAAGCGACACTGGAAGACGTTGGTAAGGAAATTGATTTGACCCGAGAACGCGTTCGCCAAATTCAAGTT
GAAGCGTTGAAGACACTTAGAACTTTGTTAGAGCGGGTTGGACTAACACAAGAGGATTTGTTTTGA

Domains

Predicted by InterProScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (69-101)

• Sigma-70 region 2 (Sigma70_r2) (107-176)

• Sigma-70 region 3 (Sigma70_r3) (187-261)

• Sigma-70, region 4 (Sigma70_r4) (275-327)

3D structure

• AlphaFold DB: Q9S4T1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	67.509	81.232	0.548