Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   EXW33_RS20170 Genome accession   NZ_CP036014
Coordinates   3905887..3906489 (-) Length   200 a.a.
NCBI ID   WP_000155587.1    Uniprot ID   -
Organism   Bacillus toyonensis strain BPN45/4     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3900887..3911489
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW33_RS20150 (EXW33_20600) dnaD 3901226..3901933 (+) 708 WP_000728536.1 DNA replication protein DnaD -
  EXW33_RS20155 (EXW33_20605) nth 3901949..3902596 (+) 648 WP_000933024.1 endonuclease III -
  EXW33_RS20160 (EXW33_20610) - 3902600..3903118 (+) 519 WP_000442696.1 YpoC family protein -
  EXW33_RS20165 (EXW33_20615) - 3903142..3905820 (-) 2679 WP_215599884.1 PBP1A family penicillin-binding protein -
  EXW33_RS20170 (EXW33_20620) recU 3905887..3906489 (-) 603 WP_000155587.1 Holliday junction resolvase RecU Machinery gene
  EXW33_RS20175 (EXW33_20625) - 3906593..3907618 (+) 1026 WP_000495634.1 DUF2515 domain-containing protein -
  EXW33_RS29435 - 3907783..3907962 (-) 180 WP_079519189.1 phage portal protein -
  EXW33_RS20180 (EXW33_20630) - 3908048..3908290 (+) 243 WP_001252045.1 hypothetical protein -
  EXW33_RS20185 (EXW33_20635) - 3908306..3908650 (+) 345 WP_000455491.1 YppE family protein -
  EXW33_RS20190 (EXW33_20640) - 3908677..3908868 (-) 192 WP_000242658.1 YppF family protein -
  EXW33_RS20195 (EXW33_20645) - 3909046..3909555 (+) 510 WP_000487692.1 YppG family protein -
  EXW33_RS20200 (EXW33_20650) - 3909713..3910129 (+) 417 WP_000546285.1 spore coat protein -
  EXW33_RS20205 (EXW33_20655) - 3910185..3910739 (+) 555 WP_000869384.1 DUF1273 domain-containing protein -
  EXW33_RS20210 (EXW33_20660) gpsB 3910837..3911172 (+) 336 WP_000622427.1 cell division regulator GpsB -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 23261.58 Da        Isoelectric Point: 9.6725

>NTDB_id=345902 EXW33_RS20170 WP_000155587.1 3905887..3906489(-) (recU) [Bacillus toyonensis strain BPN45/4]
MTIRYPNGKRYNQASLPPKTPIKKHTYSNRGMSLEEELNETNQYYLTHNIACVHKKPTPLQIVKVDYPARSAAVVKEAYF
KQPSTTDYNGVYKGKYIDFEAKETKNKTSFPLQNFHLHQIEHMKQVIAHNGVAFVIIKFTLFDEFYLLDAKHIIAFWNRQ
NNGGRKSITKEEIEAHGSLLSCGYHPRIDYIRVLDTVYFS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=345902 EXW33_RS20170 WP_000155587.1 3905887..3906489(-) (recU) [Bacillus toyonensis strain BPN45/4]
ATGACCATTCGTTACCCAAATGGAAAAAGGTACAATCAAGCTTCACTACCTCCTAAAACACCAATAAAAAAACATACTTA
TAGTAATAGAGGTATGTCCCTTGAAGAGGAATTGAATGAAACAAATCAATATTACTTAACCCATAATATTGCATGTGTAC
ATAAAAAACCTACACCTCTTCAAATTGTAAAAGTAGATTACCCCGCTCGAAGTGCTGCAGTGGTAAAAGAAGCGTATTTT
AAACAACCTTCTACAACGGATTACAACGGTGTATACAAAGGGAAATACATCGATTTTGAAGCGAAGGAAACAAAAAACAA
AACTAGTTTCCCACTTCAAAACTTCCACCTTCATCAAATTGAACATATGAAGCAAGTAATTGCTCATAATGGAGTTGCAT
TTGTTATTATTAAATTTACACTTTTTGATGAATTTTATTTACTCGATGCGAAACATATTATTGCATTTTGGAACCGTCAA
AATAATGGTGGGCGTAAGTCAATTACTAAAGAAGAAATAGAAGCGCATGGATCATTGTTATCATGCGGTTATCACCCTCG
GATTGATTATATCCGTGTACTAGACACGGTTTATTTTTCGTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(30-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

63

100

0.63

Multiple sequence alignment