Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   EXW33_RS12680 Genome accession   NZ_CP036014
Coordinates   2466300..2466584 (-) Length   94 a.a.
NCBI ID   WP_000843036.1    Uniprot ID   A0A9W5VII1
Organism   Bacillus toyonensis strain BPN45/4     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2461300..2471584
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW33_RS12645 (EXW33_12950) tmk 2461453..2462079 (+) 627 WP_000677208.1 dTMP kinase -
  EXW33_RS12650 (EXW33_12955) holB 2462115..2463098 (+) 984 WP_000754512.1 DNA polymerase III subunit delta' -
  EXW33_RS12655 (EXW33_12960) - 2463104..2463931 (+) 828 WP_000272428.1 stage 0 sporulation family protein -
  EXW33_RS12660 (EXW33_12965) yabA 2463946..2464296 (+) 351 WP_000412058.1 DNA replication initiation control protein YabA -
  EXW33_RS12665 (EXW33_12970) - 2464418..2465158 (+) 741 WP_001055365.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  EXW33_RS12670 (EXW33_12975) - 2465145..2465435 (+) 291 WP_000414346.1 GIY-YIG nuclease family protein -
  EXW33_RS12675 (EXW33_12980) rsmI 2465404..2466279 (+) 876 WP_000267800.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  EXW33_RS12680 (EXW33_12985) abrB 2466300..2466584 (-) 285 WP_000843036.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  EXW33_RS12685 (EXW33_12990) metG 2467065..2469074 (+) 2010 WP_080023394.1 methionine--tRNA ligase -
  EXW33_RS12690 (EXW33_12995) - 2469243..2470010 (+) 768 WP_000895828.1 TatD family hydrolase -
  EXW33_RS12695 (EXW33_13000) rnmV 2470230..2470787 (+) 558 WP_000692838.1 ribonuclease M5 -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10490.17 Da        Isoelectric Point: 4.7174

>NTDB_id=345883 EXW33_RS12680 WP_000843036.1 2466300..2466584(-) (abrB) [Bacillus toyonensis strain BPN45/4]
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDGNLSLAEGKIILSKEGAE
QILNELQDYIETAK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=345883 EXW33_RS12680 WP_000843036.1 2466300..2466584(-) (abrB) [Bacillus toyonensis strain BPN45/4]
ATGAAATCTACTGGTATTGTTCGTAAAGTTGATGAATTAGGTCGTGTTGTAATTCCAATCGAATTACGCCGTACTTTAGG
TATTGCAGAAAAGGATGCACTTGAAATCTATGTTGATGACGAAAAAATCATCTTAAAAAAATATAAACCAAACATGACTT
GCCAAGTAACTGGTGAAGTATCTGATGGTAACCTATCTTTAGCTGAAGGTAAAATTATCTTAAGCAAAGAAGGCGCTGAG
CAAATCTTAAACGAACTTCAAGATTATATCGAAACAGCAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

85.106

100

0.851

Multiple sequence alignment