Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   GFD20_RS13300 Genome accession   NZ_CP045768
Coordinates   2947149..2947745 (-) Length   198 a.a.
NCBI ID   WP_003159976.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain CFSAN084950     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2942149..2952745
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GFD20_RS29825 - 2942543..2942692 (-) 150 Protein_2640 hypothetical protein -
  GFD20_RS13280 (GFD20_13280) - 2942785..2944368 (+) 1584 WP_079385675.1 flavin-containing monooxygenase -
  GFD20_RS13285 (GFD20_13285) - 2944365..2945252 (+) 888 WP_023122609.1 SDR family NAD(P)-dependent oxidoreductase -
  GFD20_RS13290 (GFD20_13290) - 2945326..2945865 (+) 540 WP_003103931.1 CbrC family protein -
  GFD20_RS13295 (GFD20_13295) - 2945878..2947026 (-) 1149 WP_003103930.1 acyl-CoA dehydrogenase family protein -
  GFD20_RS13300 (GFD20_13300) recR 2947149..2947745 (-) 597 WP_003159976.1 recombination mediator RecR Machinery gene
  GFD20_RS13305 (GFD20_13305) - 2947824..2948150 (-) 327 WP_003087236.1 YbaB/EbfC family nucleoid-associated protein -
  GFD20_RS13310 (GFD20_13310) dnaX 2948196..2950283 (-) 2088 WP_042910298.1 DNA polymerase III subunit gamma/tau -
  GFD20_RS13315 (GFD20_13315) - 2950320..2951186 (+) 867 WP_003120462.1 substrate-binding periplasmic protein -
  GFD20_RS13325 (GFD20_13325) - 2951440..2951817 (-) 378 WP_003083354.1 hypothetical protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21201.44 Da        Isoelectric Point: 6.0063

>NTDB_id=345876 GFD20_RS13300 WP_003159976.1 2947149..2947745(-) (recR) [Pseudomonas aeruginosa strain CFSAN084950]
MSFSPLIRQLIESLRILPGVGQKSAQRMALMLLERDRSGGLRLAQALTAAMEGVGHCRQCRTLSEEELCPQCADPRRDDS
LLCVVEGPLDVFAVEQTGYRGRYFVLKGHLSPLDGLGPEAIGIPELEARIRDGAFSEVILATNPTVEGEATAHYIAQLLA
GRGLTLSRIAHGVPLGGELELVDGGTLAHALAGRRPIS

Nucleotide


Download         Length: 597 bp        

>NTDB_id=345876 GFD20_RS13300 WP_003159976.1 2947149..2947745(-) (recR) [Pseudomonas aeruginosa strain CFSAN084950]
ATGAGTTTCAGCCCGCTGATCCGCCAACTGATCGAGTCCCTGCGCATTCTTCCCGGTGTCGGGCAGAAGTCGGCCCAGCG
CATGGCGCTGATGCTGCTGGAGCGCGATCGCAGCGGCGGCCTGAGGCTGGCCCAGGCGTTGACCGCCGCGATGGAAGGGG
TCGGTCATTGCCGGCAGTGCCGTACCCTCAGCGAGGAGGAGCTGTGCCCGCAGTGCGCCGACCCGCGACGCGACGACTCG
CTGCTCTGCGTGGTGGAAGGCCCGCTGGACGTATTCGCGGTGGAGCAGACCGGCTACCGCGGCCGCTATTTCGTGCTCAA
GGGACACCTGTCGCCGCTCGACGGCCTGGGGCCGGAGGCGATCGGCATTCCCGAACTGGAAGCGCGGATCAGGGACGGAG
CCTTCAGCGAGGTGATCCTCGCCACCAACCCCACCGTCGAAGGCGAGGCCACCGCCCACTATATCGCCCAGCTACTGGCC
GGCCGCGGCCTGACCTTGTCGCGTATCGCCCATGGTGTGCCGCTGGGCGGCGAGCTGGAGCTGGTCGATGGCGGCACCTT
GGCCCACGCCCTGGCCGGACGGCGGCCGATCTCCTGA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(81-170)

RecR protein (RecR_ZnF)

(41-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

48.744

100

0.49
  recR Bacillus subtilis subsp. subtilis str. 168

48.469

98.99

0.48