Detailed information NTG0345875

Bioinformatically predicted

Overview

• Name: comFA
• Type: Machinery gene
• Locus tag: EXW33_RS11010
• Genome accession: NZ_CP036014
• Coordinates: 2116211..2117560 (-)
• Length: 449 a.a.
• NCBI ID: WP_000948472.1
• Uniprot ID: -
• Organism: Bacillus toyonensis strain BPN45/4
• Function: ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2111211..2122560

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EXW33_RS10990 (EXW33_11245)	secA	2111540..2114047 (-)	2508	WP_000579398.1	preprotein translocase subunit SecA	-
EXW33_RS10995 (EXW33_11250)	raiA	2114322..2114864 (-)	543	WP_000671182.1	ribosome-associated translation inhibitor RaiA	-
EXW33_RS11000 (EXW33_11255)	cspC	2115183..2115380 (-)	198	WP_002045823.1	cold shock protein CspC	-
EXW33_RS11005 (EXW33_11260)	-	2115507..2116211 (-)	705	WP_000543523.1	ComF family protein	-
EXW33_RS11010 (EXW33_11265)	comFA	2116211..2117560 (-)	1350	WP_000948472.1	ATP-dependent helicase ComFA	Machinery gene
EXW33_RS11015 (EXW33_11270)	-	2117688..2119101 (-)	1414	Protein_2195	NlpC/P60 family protein	-
EXW33_RS11020 (EXW33_11275)	-	2119262..2119576 (-)	315	WP_000400852.1	helix-turn-helix domain-containing protein	-
EXW33_RS11025 (EXW33_11280)	-	2119748..2120590 (-)	843	WP_000844774.1	DegV family protein	-
EXW33_RS11030 (EXW33_11285)	-	2120829..2121464 (+)	636	WP_000926674.1	YigZ family protein	-

Sequence

Protein

• Length: 449 a.a.
• Molecular weight: 50888.74 Da
• Isoelectric Point: 9.8393

>NTDB_id=345875 EXW33_RS11010 WP_000948472.1 2116211..2117560(-) (comFA) [Bacillus toyonensis strain BPN45/4]
MLSGKQLLLEELSTDVRDNLDDLKKKGEVVCVQGVKNKASTYMCQRCGNIAQRLFSSFLCKRCSKVCTYCRKCITMGRVS
GCAVLVRGIAEKEGEMDVNPLQWKGNLSTGQKLAAQGVMEAVKQKESFFIWAVCGAGKTEMLFYGIAEALQKGERVCIAT
PRTDVVLELAPRLKEVFPNINVAALYGGSLDREKDAALVVATTHQLLRYYRAFHVMIVDEIDAFPYHADQMLQYAVKQAM
KEKAACIYLTATPDEEWKRNLRKGKRKGIVVSGRYHRHPLPVPKFCWCGNWKKSLINKRIPQVLLQWLKVYLNKKHPIFL
FVPHVRYIEKMSRLLKLLDDRVAGVHAEDPMRKEKVAAFRKGEIPLLVTTTILERGVTVKNLQVAVLGTEEEIFSESALV
QIAGRVGRSFEEPYGEVIYFHYGKTEAMVRAKKHIRSMNKNAKEQGLID

Nucleotide

• Length: 1350 bp

>NTDB_id=345875 EXW33_RS11010 WP_000948472.1 2116211..2117560(-) (comFA) [Bacillus toyonensis strain BPN45/4]
ATGTTATCTGGGAAACAGTTATTATTAGAAGAACTCTCTACAGACGTACGGGATAATTTAGATGATTTGAAGAAGAAGGG
AGAGGTCGTATGTGTACAAGGTGTAAAAAATAAGGCTTCTACATATATGTGTCAGCGTTGCGGAAATATAGCACAAAGAC
TCTTTTCATCATTTTTGTGTAAAAGGTGTAGTAAAGTCTGCACATATTGCCGGAAGTGCATAACGATGGGGAGAGTTAGT
GGATGTGCTGTACTTGTTCGCGGAATTGCCGAAAAAGAGGGAGAAATGGATGTAAATCCGCTACAGTGGAAAGGAAATTT
ATCTACTGGCCAGAAGTTGGCTGCGCAAGGTGTTATGGAGGCTGTTAAACAGAAAGAATCGTTTTTTATTTGGGCTGTGT
GCGGCGCTGGAAAAACAGAAATGTTGTTTTATGGTATTGCAGAGGCACTTCAAAAAGGAGAAAGAGTTTGTATCGCAACG
CCGAGAACGGATGTTGTACTTGAATTAGCACCGAGATTGAAAGAAGTATTTCCGAATATAAATGTAGCTGCTTTATACGG
TGGGAGTTTAGATCGGGAAAAAGATGCAGCGTTAGTCGTTGCGACCACCCATCAGCTATTGCGTTATTATAGAGCGTTTC
ATGTCATGATTGTAGATGAAATAGATGCCTTTCCATACCATGCAGATCAAATGTTGCAGTATGCGGTAAAACAAGCGATG
AAAGAGAAGGCGGCATGTATTTATTTAACTGCAACTCCAGATGAAGAGTGGAAGCGTAACCTTAGAAAGGGGAAACGAAA
AGGTATCGTTGTTTCTGGACGGTATCACCGTCATCCGTTGCCAGTCCCCAAATTTTGCTGGTGCGGAAACTGGAAGAAAA
GCCTCATCAATAAAAGAATTCCTCAAGTTTTACTACAATGGTTAAAAGTATACTTAAATAAAAAGCACCCCATTTTTTTA
TTTGTTCCCCATGTGCGATATATAGAAAAAATGAGTCGGTTATTGAAGCTGTTAGACGATAGAGTTGCCGGTGTGCATGC
AGAAGATCCAATGAGAAAAGAGAAAGTTGCAGCTTTCAGAAAGGGAGAAATTCCTTTATTAGTTACAACGACGATTTTGG
AGAGAGGAGTAACGGTGAAAAATTTGCAAGTTGCAGTTTTAGGGACGGAAGAAGAAATATTTTCAGAAAGTGCACTCGTA
CAAATTGCAGGCCGGGTAGGTCGTAGTTTTGAAGAGCCGTATGGAGAGGTCATTTATTTTCATTATGGTAAGACAGAGGC
GATGGTGCGCGCGAAAAAACACATTCGAAGTATGAACAAAAATGCGAAAGAACAAGGGTTGATCGATTAA

Domains

Predicted by InterproScan.

• Helicase conserved C-terminal domain (Helicase_C) (313-408)

• Type III restriction enzyme, res subunit (ResIII) (106-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comFA	Bacillus subtilis subsp. subtilis str. 168	50.452	98.441	0.497
comFA	Latilactobacillus sakei subsp. sakei 23K	40.199	89.755	0.361