Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   GFD20_RS05235 Genome accession   NZ_CP045768
Coordinates   1130770..1131384 (-) Length   204 a.a.
NCBI ID   WP_003091196.1    Uniprot ID   Q02PH1
Organism   Pseudomonas aeruginosa strain CFSAN084950     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1125770..1136384
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GFD20_RS05210 (GFD20_05210) - 1126227..1126490 (+) 264 WP_003109484.1 DUF1653 domain-containing protein -
  GFD20_RS05215 (GFD20_05215) topA 1126581..1129187 (+) 2607 WP_003091201.1 type I DNA topoisomerase -
  GFD20_RS05220 (GFD20_05220) - 1129294..1129812 (+) 519 WP_003113979.1 DUF6586 family protein -
  GFD20_RS05225 (GFD20_05225) - 1130018..1130251 (+) 234 WP_003109483.1 hypothetical protein -
  GFD20_RS05230 (GFD20_05230) sulA 1130273..1130758 (-) 486 WP_023088192.1 SOS-induced cell division inhibitor SulA -
  GFD20_RS05235 (GFD20_05235) dinR/lexA 1130770..1131384 (-) 615 WP_003091196.1 transcriptional repressor LexA Regulator
  GFD20_RS05240 (GFD20_05240) psrA 1131616..1132317 (+) 702 WP_003091195.1 transcriptional regulator PsrA -
  GFD20_RS05245 (GFD20_05245) nagZ 1132519..1133517 (+) 999 WP_003118092.1 beta-N-acetylhexosaminidase -
  GFD20_RS05250 (GFD20_05250) - 1133529..1134266 (+) 738 WP_003122475.1 S-methyl-5'-thioinosine phosphorylase -
  GFD20_RS05255 (GFD20_05255) - 1134312..1134941 (-) 630 WP_003091190.1 CsiV family protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 22505.95 Da        Isoelectric Point: 6.4989

>NTDB_id=345856 GFD20_RS05235 WP_003091196.1 1130770..1131384(-) (dinR/lexA) [Pseudomonas aeruginosa strain CFSAN084950]
MQKLTPRQAEILSFIKRCLEDHGFPPTRAEIAQELGFKSPNAAEEHLKALARKGAIEMTPGASRGIRIPGFEPHAANDDE
GLPVIGRVAAGAPILAEQNIEESCRINPAFFNPRADYLLRVRGMSMKDIGILDGDLLAVHVTREARNGQVVVARIGEEVT
VKRFKREGSKVWLLAENPEFAPIEVDLKEQELIIEGLSVGVIRR

Nucleotide


Download         Length: 615 bp        

>NTDB_id=345856 GFD20_RS05235 WP_003091196.1 1130770..1131384(-) (dinR/lexA) [Pseudomonas aeruginosa strain CFSAN084950]
ATGCAGAAGCTGACGCCCCGCCAAGCCGAGATCCTCTCCTTCATCAAGCGCTGCCTGGAAGACCACGGCTTTCCGCCGAC
CCGGGCGGAAATCGCCCAGGAACTCGGCTTCAAGTCGCCGAACGCCGCCGAGGAGCACCTCAAGGCGCTGGCACGCAAGG
GCGCCATCGAAATGACTCCGGGCGCCTCTCGCGGCATCCGCATTCCCGGCTTCGAACCGCATGCCGCCAACGACGATGAG
GGCCTGCCGGTGATCGGACGGGTCGCCGCCGGCGCACCGATCCTCGCCGAACAGAACATCGAGGAATCCTGCCGTATCAA
TCCCGCCTTCTTCAATCCTCGCGCCGACTACCTGTTGCGCGTGCGCGGCATGAGCATGAAGGACATCGGCATCCTCGACG
GCGACCTGCTGGCCGTCCACGTCACCCGCGAAGCGCGCAACGGCCAGGTGGTGGTCGCGCGGATCGGCGAGGAGGTCACG
GTGAAACGCTTCAAGCGCGAAGGCAGCAAGGTCTGGCTGCTGGCGGAAAACCCTGAGTTCGCTCCGATCGAAGTCGATCT
GAAGGAGCAGGAACTGATCATCGAAGGCTTGAGCGTCGGCGTGATCCGGCGCTGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(1-65)

Peptidase S24-like (Peptidase_S24)

(83-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q02PH1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

38.35

100

0.387

Multiple sequence alignment