Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   GFD20_RS03585 Genome accession   NZ_CP045768
Coordinates   777249..777854 (+) Length   201 a.a.
NCBI ID   WP_003091706.1    Uniprot ID   A0A0H2ZDR8
Organism   Pseudomonas aeruginosa strain CFSAN084950     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 772249..782854
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GFD20_RS03585 (GFD20_03585) clpP 777249..777854 (+) 606 WP_003091706.1 ATP-dependent Clp protease proteolytic subunit Regulator
  GFD20_RS03590 (GFD20_03590) - 778197..779084 (-) 888 WP_003113144.1 metal-dependent hydrolase -
  GFD20_RS03595 (GFD20_03595) - 779094..780872 (-) 1779 WP_003160767.1 SDR family oxidoreductase -
  GFD20_RS03600 (GFD20_03600) - 780869..781744 (-) 876 WP_003091703.1 M24 family metallopeptidase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 22142.22 Da        Isoelectric Point: 5.3571

>NTDB_id=345849 GFD20_RS03585 WP_003091706.1 777249..777854(+) (clpP) [Pseudomonas aeruginosa strain CFSAN084950]
MKTDDKDREGGDSHGAIGAKLMEYALKVRKVFVTGGVDEKMAKDVVQQLHILASISDDPIYMFVNSPGGHVESGDMIFDA
IRFITPKVIMIGSGSVASAGALIYAAADKENRYSLPNTRFLLHQPSGGIQGPASNIEIYRREIVRMKERLDRIFAEATGQ
TPEKISADTERDFWLNAEEAVQYGLVNKIIVSEREITLPGQ

Nucleotide


Download         Length: 606 bp        

>NTDB_id=345849 GFD20_RS03585 WP_003091706.1 777249..777854(+) (clpP) [Pseudomonas aeruginosa strain CFSAN084950]
ATGAAAACCGATGACAAGGACCGCGAAGGCGGCGACTCCCACGGCGCCATCGGCGCCAAGCTGATGGAGTACGCGCTCAA
GGTCAGGAAGGTGTTCGTCACCGGCGGGGTCGACGAGAAGATGGCCAAGGACGTCGTCCAGCAGCTGCACATCCTCGCCT
CGATCAGCGACGATCCGATCTACATGTTCGTCAATTCCCCGGGTGGCCACGTCGAGTCCGGCGACATGATCTTCGACGCG
ATCCGCTTCATCACACCGAAGGTCATCATGATCGGTTCCGGCAGCGTTGCCAGCGCCGGCGCGCTGATCTATGCCGCGGC
GGACAAGGAAAACCGCTATTCGCTGCCCAATACCCGCTTCCTCCTGCACCAGCCGTCGGGTGGCATCCAGGGGCCGGCGA
GCAACATCGAGATCTACCGCCGCGAGATCGTGCGGATGAAGGAACGCCTCGACCGGATCTTCGCCGAAGCCACCGGGCAG
ACGCCGGAAAAGATCAGTGCCGACACCGAGCGCGACTTCTGGCTGAACGCGGAGGAGGCCGTGCAGTACGGCCTGGTCAA
CAAGATCATCGTTTCGGAACGGGAGATCACGCTGCCTGGCCAGTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(19-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZDR8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

43.195

84.08

0.363